Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2046 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCCAGAAACCATAGAATTTGATTGTGGATCTACATCAAGTGCTGCTACAGTTGAACCACATATATTCTGGAATAATATGCGGAATCCTGCAGAAAATCAATTTGTACTTTCCCCCAGTGATATAAACCCATCTCACATGAATTCTATAAACAATGAATGGCAGAACTTGAGTGGATGGAGCATAGGTGAGCCAAGTTCCAGTAATACACAGAATGGGGTTGCCAACAATGAGCAGAAAAGAGAGCTAGGATTATTGTCTTCATTAAGTTCCGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAATCAAACAATGCCTTTTCATTGGACAACGTCAATACAAGTCCTATGCATATACGCAGCTCCAGTTCTCACTTGGTGCCACAGAACCTCAACTTAAACGCAAGTTTAGCCGATAGTGGTACTGATAACAGCTATCATGTGGAACGACCTCCTAGCTTGATCAAGTCTAGTGGACCGTTAAATGAGCATGTTGCACCAACAGTTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGAACTGCTAATGGCTTTTTAGGTGAGGAAACTGATGGTAGGCCAGGTTGTTCTCTAGACACCCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAACGAAATGTTGGACAATCTTCAGATGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGTACTTGGAACACTCTTCCTACTCAGGCTTATGGGGGGATCAGTTTTAACAGATCTGCCCCAACGGATCAGGTAAATGCGAGACTTGGCCTGAGTACGGGGGATGGATCCTCTGAAAGCATTCCTGTGTCAAATGTAGCAAGAAGCTCAGGAAGTTTCCACAGAAATTTTCGTCCGAGGACAAGTCCTTCAAGTCAACAAATTTCTGTTCCTCCCACTGCAATCTCAAGTGGGAATGTTATTAGGAGTTCTGGTGTTTCATCACCCTCTCCTATATTGCAACGATTTCATCCTGTTGATAATTCTTTTGACTTGAGGGCAGTGCCACCTGTTGATACTATGGTTCCTCAAAGTCAGCCCCTTGTTATTCATGTTCCTGCTTTACCAAGGAATGCACAGTCATTCAGGTGGAGTGGTGGTTCCAGTTCAACAAACAACCATTCCTCAAACTCAGTTATGTGTGCAGATAGAAATAATCTACCAAATGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTATAGAATACCCAATGTTTGTGCCTGCAACCAACTTAAGAAACGTTGTTCGGAATCCAGCTAGAACTTCAAATAATGCAAATTTAAGTATTCCAGGAAATGTTGGTTCTTCATCGCGGACAGGCTCAAATCCAGCTGTCAATCCACCACCTGCCTCGGCGTGGGTTTCTCGCCCTAATCCTCAGCAGTATCCGCGCAGATTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAATAGTTATACTCCCTTCCGTGGTCCTCCTACTTCATCTGAATCAAGGGGACTGTCATCTGGGGTAAACCCGTTCGAGAGGCAAGGTGATAGTGAATTTGGAATTCCATATTCGTTACAATCTTTGGTTGTTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTGCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTTGACCCTTCAGTGTTCTCTGGAATTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTGGATAACATGTCCTATGAGGAGCTATTGGCTCTGGAAGAACGCATTGGAAATGTGAGCACTGGATTAAGTGAGGAGATTGTATCGAAACTTTTGAAAAAGAAGAAGTATTCAGCTGAACCAGATTCTCAGCATGAGGCAGAACCATGCTGTGTTTGTCAGGAGGAGTATAAAGATGGGGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATAGAGATTGTATTAAACAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACCTGA 2100 0.4376 MQGQRGTIGSLPETIEFDCGSTSSAATVEPHIFWNNMRNPAENQFVLSPSDINPSHMNSINNEWQNLSGWSIGEPSSSNTQNGVANNEQKRELGLLSSLSSGAIAGPRLEERRFESNNAFSLDNVNTSPMHIRSSSSHLVPQNLNLNASLADSGTDNSYHVERPPSLIKSSGPLNEHVAPTVGSGPFLLPSGTANGFLGEETDGRPGCSLDTRRVSCKRKAVERNVGQSSDGGSSSYSQHTDGSTWNTLPTQAYGGISFNRSAPTDQVNARLGLSTGDGSSESIPVSNVARSSGSFHRNFRPRTSPSSQQISVPPTAISSGNVIRSSGVSSPSPILQRFHPVDNSFDLRAVPPVDTMVPQSQPLVIHVPALPRNAQSFRWSGGSSSTNNHSSNSVMCADRNNLPNEEASSRSMPRNIIEYPMFVPATNLRNVVRNPARTSNNANLSIPGNVGSSSRTGSNPAVNPPPASAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNSYTPFRGPPTSSESRGLSSGVNPFERQGDSEFGIPYSLQSLVVAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDPSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEIVSKLLKKKKYSAEPDSQHEAEPCCVCQEEYKDGDDLGSLDCGHDYHRDCIKQWLMHKNLCPICKTTGLAT* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2046 699 CDD RING-H2_TTC3 651 693 - -
Gso17g2046 699 ProSiteProfiles Zinc finger RING-type profile. 652 693 IPR001841 -
Gso17g2046 699 MobiDBLite consensus disorder prediction 227 249 - -
Gso17g2046 699 SUPERFAMILY RING/U-box 642 695 - -
Gso17g2046 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 698 IPR045191 GO:0061630
Gso17g2046 699 MobiDBLite consensus disorder prediction 269 333 - -
Gso17g2046 699 MobiDBLite consensus disorder prediction 437 466 - -
Gso17g2046 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 696 IPR013083 -
Gso17g2046 699 SMART ring_2 652 692 IPR001841 -
Gso17g2046 699 MobiDBLite consensus disorder prediction 437 478 - -
Gso17g2046 699 Pfam Ring finger domain 652 693 IPR001841 -
Gso17g2046 699 MobiDBLite consensus disorder prediction 219 249 - -
Gso17g2046 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 698 - -
Gso17g2046 699 MobiDBLite consensus disorder prediction 497 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2046 Gso-Chr17 39988630 39993771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2046 1 699 C3H Transcription Factor Family AT2G15530 32.493 3.08e-81 271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g2046 17 39988630 39993771 Gso4g0350 4 3149769 3157734 PCT
Gso17g2046 17 39988630 39993771 Gso6g0333 6 3097997 3105617 PCT
Gso4g0350 4 3149769 3157734 Gso17g2046 17 39988630 39993771 PCT
Gso6g0333 6 3097997 3105617 Gso17g2046 17 39988630 39993771 PCT