Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2043 ATGGCGGAGATTCAGGTGCAGCATCAGAGTCCGGTGTCGGCGGCTCCTCCTCCAAACGGCGGCGTGGCGAACGCCCCGAACAACGCAAACCAGTTCGTGACGACGTCGTTGTACGTTGGCGATCTAGACCAGAATGTCAACGACTCGCAGCTCTACGATCTGTTCAACCAGGTCGGCCAAGTCGTTTCGGTGCGCGTCTGCAGGGACCTTACTACGCGTCGTTCACTCGGTTACGGCTACGTTAATTTCAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCACTTAACAACAGATCTATTAGGATCATGTATTCTCATCGAGATCCTAGTCTTAGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACTCATTCTTTCTTGCAAAATAGCAACTGATGCTTCTGGCCTGTCTAAGGGCTATGGTTTTGTTCAATTTGACAATGAAGAGGCTGCACAGAATGCTATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTAGGCCATTTCCTGCGAAAGCAAGATAGAGAGAATGCTCTCAGCAAGACAAAATTTAATAATGTCTATGTGAAAAACTTATCAGAGTCAACCACGGATGAAGAGTTGATGATAAATTTTGGAGAATATGGTACCATTACTAGTGCTTTAATAATGAGAGATGCTGATGGTAAATCAAGGTGTTTTGGCTTTGTCAATTTTGAAAACCCAGACGATGCTGCCAAAGCTGTTGAGGGACTTAATGGGAAGAAATTTGATGATAAGGAATGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACAAGAACTGAAAGGACGATTTGAGCAGAGCATAAAGGAAGCTGCTGACAAATATCCAGGTTTGAACTTGTATCTCAAGAACTTGGATGATACAATCAGTGATGAAAAACTTAAGGAAATGTTCGCCGAGTATGGTACAATAACTTCTTGCAAGGTTATGCGAGACCCCACTGGAATCAGCAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCAACTCGAGCTCTTGGTGAGATGAATGGTAAAATGTTTGCTGGAAAACCTCTGTATGTTGCCCTTGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAATTTTCACAGATGAGGCCTGTTGCAATAACGCCTTCTGTTGCGCCCCGTATGCCTCTCTACCCTCCTGGTGCTCCTGGTCTTGGACAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTAGTTCCGGGAATGAGACCTGGTGGTGGTCCCATGCCAAGCTTCTTTGTTCCCATGGTTCAGCAGGGCCAACAAGGGCAGCGCCCAGTGGGCCGCCGAGGAACAGGTCCTGTGCAACAACCCCAGCAGCCAATGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCACTTCAAGTTGCAGCTGGTGGAATGCTGTCAGTCCCTTATGACATGGGAGGTCTGCCAATGCGCGATGCTGTGGGACAGCCAATGCCCATTCAAGCTTTGGCTACAGCCCTCGCAAATGCTCCACCAGAACAGCAGAGGACTATGCTCGGTGAAGCTTTATACCCACTTGTGGATCAGCTGGAACATGATTCTGCTGCAAAGGTTACAGGCATGCTTCTGGAGATGGACCAGCCTGAAGTTTTACATCTGATTGAGTCACCAGATGCTCTGAAGGCAAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTGCTCAACAGCAAACCAACCCAGCTGATCAACTAGCCTCACTCTCTCTCAATGACAATCTTGTGTCTTAG 1965 0.4702 MAEIQVQHQSPVSAAPPPNGGVANAPNNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQRPVGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQVAAGGMLSVPYDMGGLPMRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2043 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Gso17g2043 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Gso17g2043 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Gso17g2043 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Gso17g2043 654 Gene3D - 7 116 IPR012677 -
Gso17g2043 654 Gene3D - 553 636 - -
Gso17g2043 654 Gene3D - 305 407 IPR012677 -
Gso17g2043 654 Gene3D - 205 304 IPR012677 -
Gso17g2043 654 SUPERFAMILY RNA-binding domain, RBD 214 397 IPR035979 GO:0003676
Gso17g2043 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 36 630 IPR006515 GO:0003723
Gso17g2043 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Gso17g2043 654 CDD RRM1_I_PABPs 36 115 - -
Gso17g2043 654 SMART rrm2_1 318 390 IPR003954 GO:0003676
Gso17g2043 654 SMART rrm2_1 36 109 IPR003954 GO:0003676
Gso17g2043 654 SMART rrm2_1 124 196 IPR003954 GO:0003676
Gso17g2043 654 SMART rrm2_1 215 287 IPR003954 GO:0003676
Gso17g2043 654 SUPERFAMILY RNA-binding domain, RBD 35 204 IPR035979 GO:0003676
Gso17g2043 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 634 IPR002004 GO:0003723
Gso17g2043 654 SMART rrm1_1 318 390 IPR000504 GO:0003723
Gso17g2043 654 SMART rrm1_1 36 109 IPR000504 GO:0003723
Gso17g2043 654 SMART rrm1_1 124 196 IPR000504 GO:0003723
Gso17g2043 654 SMART rrm1_1 215 287 IPR000504 GO:0003723
Gso17g2043 654 PANTHER RNA BINDING PROTEIN 24 639 - -
Gso17g2043 654 CDD RRM3_I_PABPs 213 292 - -
Gso17g2043 654 MobiDBLite consensus disorder prediction 1 25 - -
Gso17g2043 654 CDD RRM4_I_PABPs 316 394 - -
Gso17g2043 654 CDD RRM2_I_PABPs 121 197 IPR045305 -
Gso17g2043 654 PANTHER POLYADENYLATE-BINDING PROTEIN 24 639 - -
Gso17g2043 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 291 IPR000504 GO:0003723
Gso17g2043 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Gso17g2043 654 Pfam Poly-adenylate binding protein, unique domain 565 629 IPR002004 GO:0003723
Gso17g2043 654 SMART poly_2 569 632 IPR002004 GO:0003723
Gso17g2043 654 Gene3D - 117 204 IPR012677 -
Gso17g2043 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Gso17g2043 654 SUPERFAMILY PABC (PABP) domain 499 645 IPR036053 GO:0003723
Gso17g2043 654 MobiDBLite consensus disorder prediction 483 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2043 Gso-Chr17 39956507 39961677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2043 1 649 Eukaryotic Initiation Factors Gene Family AT4G34110 67.378 0.0 863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0723 14 7404977 7410079 Gso17g2043 17 39956507 39961677 GST