Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2040 ATGGAAGAAAGAGATCACCGTTGTTCCAACAATTCAACGATGATCACAACAACAAAGAAAAAAACGAGCAGAAGAAGTCCCACATCGGATAAGCTGAAGAATCAACACCCCTGTGAGAAGCAGACGATGAAACCGTACAGAGGAATAAGGATGCGAAAGTGGGGGAAGTGGGTGGCGGAGATCAGAGAACCCAACAAGAGGTCGAGGATTTGGTTGGGTTCGTACACGACACCCATGGCCGCCGCACGCGCCTACGACACAGCCGTTTTCTACCTCCGAGGTCCCACCGCACGCCTTAACTTCCCCGAACTCTTGTTCCAGGACGACCAGGAGGAGGGCAATGATTCGGTGCAGCACGGTGCAGCAGCAGGGAACATGTCCGCTGATTCCATTCGCCGAAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCTCTCCAAACCGCGCTTCACCACCACGCGTCAAGTACCAACTCTCTCAAACCCGACTTGAACGAGTTTCCAAAACTCGAATCCCTTCAAGATTGA 525 0.5314 MEERDHRCSNNSTMITTTKKKTSRRSPTSDKLKNQHPCEKQTMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPMAAARAYDTAVFYLRGPTARLNFPELLFQDDQEEGNDSVQHGAAAGNMSADSIRRKATQVGARVDALQTALHHHASSTNSLKPDLNEFPKLESLQD* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2040 174 MobiDBLite consensus disorder prediction 149 174 - -
Gso17g2040 174 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Gso17g2040 174 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Gso17g2040 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 172 - -
Gso17g2040 174 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Gso17g2040 174 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Gso17g2040 174 MobiDBLite consensus disorder prediction 23 38 - -
Gso17g2040 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 172 - -
Gso17g2040 174 MobiDBLite consensus disorder prediction 1 38 - -
Gso17g2040 174 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Gso17g2040 174 Pfam AP2 domain 46 94 IPR001471 GO:0003700|GO:0006355
Gso17g2040 174 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gso17g2040 174 PRINTS Ethylene responsive element binding protein signature 84 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2040 Gso-Chr17 39918596 39919624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2040 40 157 AP2-EREBP Transcription Factor Family AT2G23340 65.254 8.23e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso17g2040 AP2 3.9e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0725 14 7449675 7450693 Gso17g2040 17 39918596 39919624 GST