Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2032 ATGGGTTCTTCTTCTATTACAACATCGCCCGCAACCATGACCATGGCTGCGATCGTGCTCCTGTTCACGGTCTTTGCCGTTTCCTCCGCCCTAGACATGTCGATAATCTCGTACGACAGCGCCCACGCGGACAAGGCCGCCACGTTGCGCACCGAGGAGGAGCTGATGTCCATGTACGAGCAGTGGCTCGTGAAGCACGGGAAGGTGTACAACGCGCTCGGCGAGAAGGAGAAGCGCTTCCAGATCTTCAAGGACAACCTGCGATTCATCGACGACCACAACTCCGCGGAGGACCGAACCTACAAGCTCGGACTGAACCGGTTCGCTGATCTCACCAACGAGGAATACAGGGCCAAGTACTTGGGAACCAAGATCGATCCCAACCGGAGGCTCGGAAAGACCCCGAGCAACCGCTACGCGCCACGTGTCGGCGACAAATTGCCTGATTCCGTTGATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAGATAGTAACAGGCGAACTGATTTCGTTATCAGAACAAGAATTGGTGGATTGTGATACTGGATATAACCAAGGATGCAATGGAGGACTTATGGACTATGCATTTGAGTTCATAATCAACAATGGCGGCATTGATTCTGATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTATGATGAGTTAGCCTTGAAAAAGGCCGTTGCAAATCAGCCCGTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCTGTTGGGTATGGAACAGCTAAAGGTCATGATTATTGGATCGTAAGGAATTCATGGGGTTCTAGCTGGGGAGAGGATGGCTACATCAGATTAGAAAGAAATCTTGCTAACAGCAGATCAGGCAAGTGTGGAATTGCAATTGAGCCATCTTATCCCCTTAAGAATGGTCCAAATCCCCCTAATCCTGGACCATCACCCCCTTCACCTGTGAAGCCGCCAAATGTCTGTGACAACTACTACAGCTGTGCTGATAGTGCTACTTGTTGCTGTATTTTTGAGTTCGGAAATGCTTGCTTCGAGTGGGGTTGCTGTCCTCTTGAGGGTGCTTCCTGCTGTGATGACCACTACAGTTGCTGCCCTGCAGACTATCCCATCTGCAACACTTACGCTGGAACTTGTCTCAGGAGCAAGAACAACCCCTTTGGAGTGAAGGCATTAAGGCGTACTCCAGCGAAACCCCATTGGACCTTCGGACGTAAGAACAAGGTCAGCAGTGCTTAA 1431 0.4997 MGSSSITTSPATMTMAAIVLLFTVFAVSSALDMSIISYDSAHADKAATLRTEEELMSMYEQWLVKHGKVYNALGEKEKRFQIFKDNLRFIDDHNSAEDRTYKLGLNRFADLTNEEYRAKYLGTKIDPNRRLGKTPSNRYAPRVGDKLPDSVDWRKEGAVPPVKDQGGCGSCWAFSAIGAVEGINKIVTGELISLSEQELVDCDTGYNQGCNGGLMDYAFEFIINNGGIDSDEDYPYRGVDGRCDTYRKNAKVVSIDDYEDVPAYDELALKKAVANQPVSVAIEGGGREFQLYVSGVFTGRCGTALDHGVVAVGYGTAKGHDYWIVRNSWGSSWGEDGYIRLERNLANSRSGKCGIAIEPSYPLKNGPNPPNPGPSPPSPVKPPNVCDNYYSCADSATCCCIFEFGNACFEWGCCPLEGASCCDDHYSCCPADYPICNTYAGTCLRSKNNPFGVKALRRTPAKPHWTFGRKNKVSSA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2032 476 Pfam Papain family cysteine protease 147 362 IPR000668 GO:0006508|GO:0008234
Gso17g2032 476 Gene3D Cysteine proteinases 40 365 - -
Gso17g2032 476 SUPERFAMILY Granulin repeat 383 417 - -
Gso17g2032 476 SMART pept_c1 147 363 IPR000668 GO:0006508|GO:0008234
Gso17g2032 476 Pfam Cathepsin propeptide inhibitor domain (I29) 59 116 IPR013201 -
Gso17g2032 476 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 305 315 IPR025660 -
Gso17g2032 476 PRINTS Papain cysteine protease (C1) family signature 165 180 IPR000668 GO:0006508|GO:0008234
Gso17g2032 476 PRINTS Papain cysteine protease (C1) family signature 307 317 IPR000668 GO:0006508|GO:0008234
Gso17g2032 476 PRINTS Papain cysteine protease (C1) family signature 322 328 IPR000668 GO:0006508|GO:0008234
Gso17g2032 476 SMART GRAN_2 386 443 IPR000118 -
Gso17g2032 476 PANTHER CYSTEINE PROTEASE 40 392 - -
Gso17g2032 476 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 322 341 IPR025661 -
Gso17g2032 476 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 165 176 IPR000169 -
Gso17g2032 476 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 392 - -
Gso17g2032 476 SMART Inhibitor_I29_2 59 116 IPR013201 -
Gso17g2032 476 CDD Peptidase_C1A 148 362 IPR039417 -
Gso17g2032 476 Gene3D Granulin 384 446 IPR037277 -
Gso17g2032 476 SUPERFAMILY Cysteine proteinases 51 363 IPR038765 -
Gso17g2032 476 Pfam Granulin 397 444 IPR000118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2032 Gso-Chr17 39805049 39809347 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0736 14 7615700 7620184 Gso17g2032 17 39805049 39809347 GST
Gso17g2032 17 39805049 39809347 Gso4g0363 4 3304514 3308234 PCT
Gso4g0363 4 3304514 3308234 Gso17g2032 17 39805049 39809347 PCT