Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2023 ATGGATCGGGTGAAGGGTCCATGGAGCCCAGAAGAGGACGAGGCTTTGCGGAGGCTGGTTCAGGCCCACGGGCCTCGAAACTGGTCGGTGATAAGCAAGTCCGTTCCGGGACGATCCGGGAAATCGTGCCGCTTACGGTGGTGCAACCAGCTCTCGCCGCAGGTGGCCCACCGCCCCTTCTCGCCGGACGAGGACGAGGCCATCGTCAGGGCTCACGCCAGGTTCGGCAACAAGTGGGCCACCATAGCTCGCCTTCTCAACAACGGCCGCACCGATAACGCCGTCAAAAACCACTGGAACTCCACTCTCAAGAGAAAAAAATGTTCCGCCGTTAGTGACGACGTCACCGATCGTCCGCCTCTTAAAAGATCTGCAAGCGTCGGCCCGGCCCATTTGAACCCTGGCAGCCCATCGGGCTCCGATTTGAGCGATCCGAGCCTGCCCGCTCTCTCAAACCCCTCCCCCTCGGCCCATTACAGGCCCAATCTCATGGAAACCGCTTCTTCTGCTTGCGATCCAGCCACGTCACTGAGTTTGTCTCTCCCCGGGTTCGGGTCCGGGTCTAACCCAGTTTGCGCACCTCGACCGGTATCGGTGTCTCCGCCGTCACCGCCTCCGGCGGAGCCGGTGGAGCAGCGGGGGAAGCAAATGTTCAACGCGGAGTTCTTGAGAGTGATGCAAGAGATGATAAGAAAGGAAGTGAGGAGTTACATGTCAGGGATGGAACAGAAGAATGGCTTCAGAATACCAACCGAAGCGATTGGGAACGCGGTGGTGAAGCGCATGGGAATTAGCAACATCGAGTGA 807 0.5911 MDRVKGPWSPEEDEALRRLVQAHGPRNWSVISKSVPGRSGKSCRLRWCNQLSPQVAHRPFSPDEDEAIVRAHARFGNKWATIARLLNNGRTDNAVKNHWNSTLKRKKCSAVSDDVTDRPPLKRSASVGPAHLNPGSPSGSDLSDPSLPALSNPSPSAHYRPNLMETASSACDPATSLSLSLPGFGSGSNPVCAPRPVSVSPPSPPPAEPVEQRGKQMFNAEFLRVMQEMIRKEVRSYMSGMEQKNGFRIPTEAIGNAVVKRMGISNIE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2023 268 MobiDBLite consensus disorder prediction 131 161 - -
Gso17g2023 268 Gene3D - 4 56 - -
Gso17g2023 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 107 IPR017930 -
Gso17g2023 268 SUPERFAMILY Homeodomain-like 2 99 IPR009057 -
Gso17g2023 268 CDD SANT 7 49 IPR001005 -
Gso17g2023 268 MobiDBLite consensus disorder prediction 105 161 - -
Gso17g2023 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Gso17g2023 268 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Gso17g2023 268 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Gso17g2023 268 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Gso17g2023 268 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Gso17g2023 268 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 238 - -
Gso17g2023 268 PANTHER MYB PROTEIN-RELATED 1 238 - -
Gso17g2023 268 SMART sant 56 105 IPR001005 -
Gso17g2023 268 SMART sant 4 53 IPR001005 -
Gso17g2023 268 Gene3D - 59 118 - -
Gso17g2023 268 CDD SANT 59 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2023 Gso-Chr17 39680996 39682326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2023 2 268 MYB Transcription Factor Family AT5G67300 52.787 1.35e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g2023 Myb_DNA-binding 1.9e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0743 14 7739874 7741197 Gso17g2023 17 39680996 39682326 GST
Gso17g2023 17 39680996 39682326 Gso4g0369 4 3376869 3378169 PCT
Gso4g0369 4 3376869 3378169 Gso17g2023 17 39680996 39682326 PCT