LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g2020	ATGGCAACTTCTGAGAACAACAGCAGCGCGCGTCCCCAACGCGAAGCGAAGAAGAGGGCCGCAGCTGCAATATCCCAAATTCATGGCAACGCCGCCAAGAAGAAACGCGTCGTTTTAGGCGACGTCACTAACGTTTCCTCAAGCGACGTCGCCGTTTCCGTTTCCAAAAAACCCGTTCAGACACATAAAAATGTTAAACTCGAGAAACCGGCCGCGCCGGTTGCCACGCCGGAGAAGGTTGAGGAAAGACACGACCCGCAACTCTGTGGGCCCTACGTTTCTGATATATACGAATACCTTCGCGGAATGGAGGTGGATCCTAGTAAGAGACCATTGATGGATTATGTTCAGAAGATTCAGAGGGATGTTAATGCTAACATGCGCGGTGTTCTTGTGGATTGGTTGGTGGAAGTTGCAGAAGAATACAAACTTGTTTCGGACACGCTTTATTTCTCTGTTGCTTATATTGATAGGTTTTTGTCGTTGAATATTTTGTCGAGACAGAGGTTGCAATTGCTGGGGGTTGCTTCAATGCTCATTGCTTCGAAATACGAAGAGATTAAGCCGCCCGAGGTGGAGGATTTTTGTTACATTACGGATAACACATACTCTAAGGAAGAGGTTGTGAACATGGAGGCTGAAATATTGAAGGCTTTGAAATTTGAATTGGGTGGTCCTACAGTGAAGACATTCTTGAGGTGTGTTTCTTTGTTGAATCTATGTCCATGTTGTGTTAATTTTGCTTGTTTTAGTTGTTTTTGCCTTGGCATTTTGGCTCATCGCTCTGTATGCTTTTGCCTTCTTGTTTGCAGGAGATTCTCCAGAGTTGGTCAAGAGGGTGTTGATACTTCTGATCTCCAGTTTGAGTTCCTTAGCTGCTACCTTGCCGAGCTCAGTTTGTTGGATTATAATTGTATAAAGTTTTTGCCATCTTTGGTGGCTGCATCAGTTGTATTCCTAGCAAGATTTATGTTTAGCACAAAGACACATCCTTGGAATTCGGCACTCCATCAACTCACTAGATATAAACCTGCTGACTTGAAGGAATGTGTTCTAAACTTACATGACTTGTACCTCAGTAGGAGAGGGGCCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGTGTGGCAACAACACCATCTCCTCCCGAGATACCTCTTTCTTTTTTTGAATTTGAGGGGCAGATTCTTAGGCAATTGTAA	1218	0.4409	MATSENNSSARPQREAKKRAAAAISQIHGNAAKKKRVVLGDVTNVSSSDVAVSVSKKPVQTHKNVKLEKPAAPVATPEKVEERHDPQLCGPYVSDIYEYLRGMEVDPSKRPLMDYVQKIQRDVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVAYIDRFLSLNILSRQRLQLLGVASMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVNMEAEILKALKFELGGPTVKTFLRCVSLLNLCPCCVNFACFSCFCLGILAHRSVCFCLLVCRRFSRVGQEGVDTSDLQFEFLSCYLAELSLLDYNCIKFLPSLVAASVVFLARFMFSTKTHPWNSALHQLTRYKPADLKECVLNLHDLYLSRRGASLQAVREKYKQHKFKCVATTPSPPEIPLSFFEFEGQILRQL*	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g2020	405	CDD	CYCLIN	285	355	IPR013763	-
	Gso17g2020	405	SUPERFAMILY	Cyclin-like	84	223	IPR036915	-
	Gso17g2020	405	SMART	Cyclin_C_2	226	387	IPR004367	-
	Gso17g2020	405	SMART	cyclin_7	271	356	IPR013763	-
	Gso17g2020	405	SMART	cyclin_7	133	217	IPR013763	-
	Gso17g2020	405	CDD	CYCLIN	127	216	IPR013763	-
	Gso17g2020	405	PANTHER	CARBOXY-TERMINAL DOMAIN CYCLIN	23	254	-	-
	Gso17g2020	405	PANTHER	CARBOXY-TERMINAL DOMAIN CYCLIN	270	402	-	-
	Gso17g2020	405	Pfam	Cyclin, C-terminal domain	270	386	IPR004367	-
	Gso17g2020	405	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gso17g2020	405	Pfam	Cyclin, N-terminal domain	95	223	IPR006671	-
	Gso17g2020	405	SUPERFAMILY	Cyclin-like	271	389	IPR036915	-
	Gso17g2020	405	PIRSF	Cyclin_A_B_D_E	263	392	IPR039361	-
	Gso17g2020	405	PIRSF	Cyclin_A_B_D_E	1	242	IPR039361	-
	Gso17g2020	405	Gene3D	-	113	217	-	-
	Gso17g2020	405	Gene3D	-	218	391	-	-
	Gso17g2020	405	ProSitePatterns	Cyclins signature.	128	159	IPR006671	-
	Gso17g2020	405	PANTHER	CYCLINS	23	254	IPR039361	-
	Gso17g2020	405	PANTHER	CYCLINS	270	402	IPR039361	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g2020	Gso-Chr17	39610957	39614747	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g2020	4	396	Core Cell Cycle Gene Families	AT1G47210	51.970	1.82e-143	411

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso17g2020	17	39610957	39614747	Gso4g0378	4	3465666	3468030	PCT
	Gso4g0378	4	3465666	3468030	Gso17g2020	17	39610957	39614747	PCT