Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2010 ATGGCTTTGGAAGCTCTCAACTCACCAACAACAACCGCTCCATCTTTTCCCTTTGACGACCCAACTATTCCATGGGCGAAACGAAAACGTTCAAAGCGTTCTCGCGACCATCCTTCTGAAGAAGAGTACCTCGCCCTCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCACCGTCAACAACCGCCACGTCAGCCCTCCACCGCCACAGCCACAGCCACAGCCGACACCAGATCCTTCCACCAAGCTCAGTTACAAATGCTCCGTTTGCGACAAGAGCTTCCCCTCTTACCAAGCGCTCGGTGGACACAAGGCCAGTCACCGGAAACTCGCCGCCGCCGCCGAAGACCAACCCCCCAGCACCACCACTTCCTCCGCCGCCGCCACCAGCTCCGCCTCCGGAGGTAAGGCCCATGAGTGCTCCATTTGCCACAAATCCTTCCCCACCGGACAGGCCCTTGGCGGACACAAACGTTGTCACTACGAAGGTAACGGTAACGGAAATAACAACAACAGTAACAGCGTTGTCACCGTCGCCTCGGAAGGCGTGGGGTCCACCCACACTGTCAGTCACGGCCACCACCGCGACTTCGATCTCAACATCCCGGCCTTTCCGGATTTTTCGACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTCATGAAGAAGCCTCGCCTCTTCGTCATTCCCAAGATCGAAATCCCCCAATTTCAATGA 723 0.5768 MALEALNSPTTTAPSFPFDDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGGTTTVNNRHVSPPPPQPQPQPTPDPSTKLSYKCSVCDKSFPSYQALGGHKASHRKLAAAAEDQPPSTTTSSAAATSSASGGKAHECSICHKSFPTGQALGGHKRCHYEGNGNGNNNNSNSVVTVASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKVGEDEVESPHPVMKKPRLFVIPKIEIPQFQ* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2010 240 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Gso17g2010 240 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 231 IPR044653 GO:0003700
Gso17g2010 240 SMART c2h2final6 85 107 IPR013087 -
Gso17g2010 240 SMART c2h2final6 138 160 IPR013087 -
Gso17g2010 240 SUPERFAMILY beta-beta-alpha zinc fingers 85 160 IPR036236 -
Gso17g2010 240 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gso17g2010 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Gso17g2010 240 MobiDBLite consensus disorder prediction 64 78 - -
Gso17g2010 240 PANTHER ZINC FINGER PROTEIN ZAT10 1 231 - -
Gso17g2010 240 MobiDBLite consensus disorder prediction 58 84 - -
Gso17g2010 240 Pfam C2H2-type zinc finger 85 109 - -
Gso17g2010 240 Pfam C2H2-type zinc finger 137 161 - -
Gso17g2010 240 MobiDBLite consensus disorder prediction 116 131 - -
Gso17g2010 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 160 IPR013087 -
Gso17g2010 240 MobiDBLite consensus disorder prediction 1 17 - -
Gso17g2010 240 MobiDBLite consensus disorder prediction 108 131 - -
Gso17g2010 240 MobiDBLite consensus disorder prediction 1 39 - -
Gso17g2010 240 Gene3D Classic Zinc Finger 83 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2010 Gso-Chr17 39463712 39464829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2010 1 236 C2H2 Transcription Factor Family AT1G27730 51.190 9.62e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g2010 zf-C2H2_6 9.4e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0757 14 7920795 7921815 Gso17g2010 17 39463712 39464829 GST
Gso17g2010 17 39463712 39464829 Gso4g0390 4 3560776 3561821 PCT
Gso17g2010 17 39463712 39464829 Gso6g0367 6 3449171 3450306 PCT
Gso4g0390 4 3560776 3561821 Gso17g2010 17 39463712 39464829 PCT
Gso6g0367 6 3449171 3450306 Gso17g2010 17 39463712 39464829 PCT