Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2009 ATGGAACCTGTAGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCCGAATTTTTGCGAGTGATGAGGAGCATGAGCATGATTTATTCACACCTCAATTTCCACTTCTGTTTGATGGTGATGATGGATTGAACATTGTGACACAACACACATTTTGTGCTGCTCCTGAAGCCGGTGAAAATGCGTGTATGTTTTATTCTTTAGATGCTGATCACAACTCAAATTCTTCTCAGTATATTTCACAAGAAAGTAGCTATAGTAATACTAGTAGCAACTGTAGTGGTGACGACACTGTCTTCATTGCCAATCCGGGTAACGCAAACTATTATTTTAGTTACCCTGATCATGTGCTAGCAAACAATAATGCATGTGTATATTCCATGGATGAGAAATTTTTTGCCTCTTTTGTCCCATCGATTTCTGACATTGTAACGGAAGAGAGTGCCAAGTTGTATAAAGATGTGGGGAGTGACAAATTGGAGAATTCTCAATGCAATCAAATGGAACCTATTGTTTTTCCCACCAAGCAGTTGCAGCTCAAAAGGAAGCTTGATGTGCCTGCTGAAGATAAAATCAACAAAGGATCTGAGAATCAAAAGAAAAAGGCTCGTGTTTCAAAAGATGGCCAAGGATGCATGAAAAACACATGGTCCAAGAAGAATCAGAAACATACCAGCAACGGGGAAGAGGCAGAAGAAACTAATACAGGATTAGATGGACAAAGCTGTAGTAGTAACATGTCAGAGGATGATAACACTTCTAAATCTGCTCTCAACTCAAATGGGAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAAAGTCTGTATGCAAGGAAAAGAAGAGAGAGAATAAACGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAGGTTGACATAAGCACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATCTATGGATGTATGCACCATTTGCTCACAATGGGCTTGACATTGGACTCAATCTCAACTCCCTGCCACTTTAA 1062 0.4058 MEPVGAFPDGEWDCFRRIFASDEEHEHDLFTPQFPLLFDGDDGLNIVTQHTFCAAPEAGENACMFYSLDADHNSNSSQYISQESSYSNTSSNCSGDDTVFIANPGNANYYFSYPDHVLANNNACVYSMDEKFFASFVPSISDIVTEESAKLYKDVGSDKLENSQCNQMEPIVFPTKQLQLKRKLDVPAEDKINKGSENQKKKARVSKDGQGCMKNTWSKKNQKHTSNGEEAEETNTGLDGQSCSSNMSEDDNTSKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPFAHNGLDIGLNLNSLPL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2009 353 MobiDBLite consensus disorder prediction 187 282 - -
Gso17g2009 353 MobiDBLite consensus disorder prediction 187 208 - -
Gso17g2009 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Gso17g2009 353 SMART finulus 276 325 IPR011598 GO:0046983
Gso17g2009 353 MobiDBLite consensus disorder prediction 231 274 - -
Gso17g2009 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 350 - -
Gso17g2009 353 Gene3D - 269 327 IPR036638 GO:0046983
Gso17g2009 353 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Gso17g2009 353 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 350 - -
Gso17g2009 353 CDD bHLH_AtIND_like 271 333 - -
Gso17g2009 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2009 Gso-Chr17 39451834 39454354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2009 218 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 68.889 3.27e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g2009 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0758 14 7941827 7943957 Gso17g2009 17 39451834 39454354 GST