Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2007 ATGGGAACGGAAGGCTACACTTACATGGGGCGCAGTTTGAGCGAACTCCGCATCAACGACGATTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACGCGGCGGTTTCTCATCGCCTGCGCCACCGAAAATTCCGACGACTTGATCCGCCAACTCGTCGCCGATCTCCACTCCTCCTCCATCGACGATCAGAAGCAAGCCGCCATGGAAATCCGATTACTCGCGAAGAACAAGCCGGAGAATCGCATCAAAATCGCGAAAGCCGGCGCAATCAAACCGCTAATTTCTCTCATTTCCTCGCCGGACCTTCAGCTCCAGGAATACGGCGTCACCGCGATTTTGAACCTCTCGCTCTGCGACGAGAACAAGGAGGTGATAGCCTCCTCAGGCGCGATCAAGCCGCTGGTTCGCGCGCTGAACAGTGGAACCGCCACGGCGAAGGAGAACGCGGCGTGCGCGCTTCTAAGACTCTCGCAGGTGGAGGAGAACAAGGCGGCGATCGGGCGGTCCGGCGCGATTCCGCTTCTTGTGAGCCTCCTGGAGAGCGGCGGGTTCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAATAAGATCAGAGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGTTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTTGCGGTGCCGGAGGCGAGGGTGGCGCTGGTGGAAGAAGGAGGCGTGCCGGTGCTGGTGGAGATCGTCGAGGTTGGGACGCAGAGGCAGAAGGAAATCGCGGTGGTTATTCTTTTACAGGTTTGCGAGGACAGCGTGACGTATCGCACCATGGTCGCTCGCGAAGGTGCGATTCCTCCTTTGGTCGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTAATTGAGCTTCTGCGGCAACCAAGGTCCGGCAACGGCGCTGCTCGAAGTACATCAGAAGTGGTGGCGTAG 1059 0.5911 MGTEGYTYMGRSLSELRINDDSSSSAFSDCNSDRSGEFATASSQTRRFLIACATENSDDLIRQLVADLHSSSIDDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEVIASSGAIKPLVRALNSGTATAKENAACALLRLSQVEENKAAIGRSGAIPLLVSLLESGGFRAKKDASTALYSLCTVKENKIRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVAVPEARVALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVTYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNGAARSTSEVVA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2007 352 Gene3D - 39 349 IPR011989 -
Gso17g2007 352 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 344 - -
Gso17g2007 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Gso17g2007 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Gso17g2007 352 SUPERFAMILY ARM repeat 58 331 IPR016024 -
Gso17g2007 352 PANTHER U BOX DOMAIN-CONTAINING 5 344 - -
Gso17g2007 352 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Gso17g2007 352 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Gso17g2007 352 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Gso17g2007 352 SMART arm_5 131 171 IPR000225 GO:0005515
Gso17g2007 352 SMART arm_5 213 253 IPR000225 GO:0005515
Gso17g2007 352 SMART arm_5 296 336 IPR000225 GO:0005515
Gso17g2007 352 SMART arm_5 172 212 IPR000225 GO:0005515
Gso17g2007 352 SMART arm_5 254 294 IPR000225 GO:0005515
Gso17g2007 352 SMART arm_5 90 130 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2007 Gso-Chr17 39407866 39410095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2007 11 341 U-box Gene Family AT2G23140 46.567 1.49e-86 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0762 14 8017672 8019789 Gso17g2007 17 39407866 39410095 GST
Gso17g2007 17 39407866 39410095 Gso6g0372 6 3476218 3477808 PCT
Gso6g0372 6 3476218 3477808 Gso17g2007 17 39407866 39410095 PCT