Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1528 ATGATCCAAGAATTGTTGGGTGGTGCCCTCATAGCAGGAGAAAGAAAACCTTCCTCCATTAATGGAGGAGGTGGAGGAGGAGGAGTTTTACTCCCAATTACTACACCTTCTCCTTCTTCTTTTCCCTCTTCCACGACCAGTGATGTTACCCTCACATCCACAACAACAACTGCTGCTACTACTGCTGCTACTGCTGCTACTACTACTACTGCTGTCGAAAACCTGAGATGTCCTCGATGTGATTCATCGAACACCAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCGCGGCACTTCTGCAAGACGTGCCGCCGCTACTGGACCAAAGGTGGGGCTCTCCGGAACGTCCCCATCGGAGGCGGATGCCGGAAGAATAAGAGCATTGGCGTGGCGAGCTCGGTGGCGGGGAAGACAGCCTCGACCAAGATGAAAACCATTGCATCGGAGTTTGGAAAATCGCCGGGCTTTGGCGGTGGGTTCGAGGTGGAACACGAACTTCCGCCACCACCGGGCCAAATCCTCTGGGGATCGCCCCAAAACACCCACCTTCTAGCCTTGCTGAGAGCTACACAAACTCAAAACCCTAACCCTAACCCTAGTCCCATGTCCCTCAAGGAAGAAGGAACCCTATTGGGCCACATGGTGAGCACTGATCAGCCCTTGGTTTCAAACACTTTGCTGAGCTACCGAACCTTAGGCTATGATGCTGTTGCGCAAGTTCCTTCTTCGCTTGGTCTGTTTGGGAGAAACAATCAAGATCAACAACAACAAAATGGAGGGTTCCTAGTTGGGGAACATCACAACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCATCAACTGTTAATAATAATTATTGCAGTGATAATAACTCGTCACAAATGTTTATGGGGAACATGGCTTCTAACTATTCCTCTTCTGTGTCCAACAACATTTTGGAGACAACCTCGGTTGCTGGGGGTGAATTCGGATACTGGAATGGTCCAACTTTTTCTAATTGGTCTGATCTTCCAACCACTAATGGCGCTGGTGCATATCCGTAA 1059 0.4891 MIQELLGGALIAGERKPSSINGGGGGGGVLLPITTPSPSSFPSSTTSDVTLTSTTTTAATTAATAATTTTAVENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGVASSVAGKTASTKMKTIASEFGKSPGFGGGFEVEHELPPPPGQILWGSPQNTHLLALLRATQTQNPNPNPSPMSLKEEGTLLGHMVSTDQPLVSNTLLSYRTLGYDAVAQVPSSLGLFGRNNQDQQQQNGGFLVGEHHNNSGIQELYQKLRSSSTVNNNYCSDNNSSQMFMGNMASNYSSSVSNNILETTSVAGGEFGYWNGPTFSNWSDLPTTNGAGAYP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1528 352 MobiDBLite consensus disorder prediction 16 47 - -
Gso17g1528 352 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Gso17g1528 352 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Gso17g1528 352 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Gso17g1528 352 MobiDBLite consensus disorder prediction 33 47 - -
Gso17g1528 352 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 348 IPR045174 GO:0003700|GO:0006355
Gso17g1528 352 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 10 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1528 Gso-Chr17 20819025 20820654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1528 60 180 C2C2-Dof Transcription Factor Family AT1G51700 51.587 4.01e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso17g1528 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1528 - - gmx:778108 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1570 1 52360386 52362050 Gso17g1528 17 20819025 20820654 PCT
Gso11g0508 11 4530062 4531753 Gso17g1528 17 20819025 20820654 PCT
Gso17g1528 17 20819025 20820654 Gso1g1570 1 52360386 52362050 PCT
Gso17g1528 17 20819025 20820654 Gso11g0508 11 4530062 4531753 PCT