Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0848 ATGCACGAAATTAGAGACCCTGCAATTCGGCTCTTCGGTCAGAAGATCCCTTTCCCTGAAGATGTTGACAAAGAAGAAGAGAGTGCTGAGGATAGAGAACAAGAGATGGAAGAACATGAAGACGAAGGAGACAAGGATACTAGAGTTGAAAATGTTACTAAGGAAGAGCTAGAAGCTGATCCTCCTCTAGATGCTGAAGAGACTAAGATTTCAGGCACATCCCCTGAGGCTATTGTGAACCCCAAAACACCTTCCATAGAAGAAGAAACAGCAAAATCAAAAGGTGGCAAATCAGAGAAGGAACAAGGCGATGCAGCCAACTCACAAGAGAAAACCCTGAAGAAGCCTGATAAAGTGCTACCATGCCCCCGCTGCAAAAGCATGGACACTAAATTCTGTTACTACAACAACTACAATGTCAACCAGCCGCGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGACGGCGAAAGAACAAGAACTCTACCTCGCATTATCGCCACATCACTATCTCCGAGGCCCTTCAAGCAGCAAGAATTGATGCTCAAAATGGAACTCATCTTCCAACTTTGAAAGGCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACATGCACCTATTTGTGATTCCATGGCATCTCTCATGAATCTTGGAGAGAAAAAGGCTCTTAATGGCACAAGAAATGGGTTTCATCATGGCTTTGAGGATCAAAGACTCCCCGTTCCTTGCAAAAGTGGGGAAAATGGTGATGACTCTTCAACTACATCCTCCATTACAATTTCAAGTCCCAAGGGAGAAAATAACAAAAGCACCTTCCAACAACAACCATTGCCCCAAAATCATGGTTTCCTTCCTCAAGTTCCATGCATTCCTGGTGTTCCTTGGCCCTATACATGGAATTCTCCAGTTCCTCCACCTGCTTTGTGTCCTTCAGGATTTCCCCTACCATTCTATCCTGCTACATTTTGGAATTGTGGCATGCCTGGGAATTGGAATGTTCCATGGTTTTCCTCAAGTTCACCTGCTTCAAACCTCAAGTCTCCAAGCTCCAGTCCCAATTCTCCAACTTTGGGGAAGCACTCGCGGGACAGTGACATGATTAAGCAAGACTCTTTGCACAAAGAAGAAGCTTCAACGCCAAGAAACGGGAGTGTTTTGGTCCCAAAAACGTTGAGAATTGATGATCCAAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTGAGTGGGGGAGCTATGTTTAAGGCCTTCCAATCGAAGAAGGGTGAAAAGAATCATGTTGAAGCCTCTCCAATGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAAAACTCCTGA 1416 0.4492 MHEIRDPAIRLFGQKIPFPEDVDKEEESAEDREQEMEEHEDEGDKDTRVENVTKEELEADPPLDAEETKISGTSPEAIVNPKTPSIEEETAKSKGGKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDAQNGTHLPTLKGNGRVLSFGLDAHAPICDSMASLMNLGEKKALNGTRNGFHHGFEDQRLPVPCKSGENGDDSSTTSSITISSPKGENNKSTFQQQPLPQNHGFLPQVPCIPGVPWPYTWNSPVPPPALCPSGFPLPFYPATFWNCGMPGNWNVPWFSSSSPASNLKSPSSSPNSPTLGKHSRDSDMIKQDSLHKEEASTPRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGAMFKAFQSKKGEKNHVEASPMLMANPAALSRSLNFHENS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0848 471 MobiDBLite consensus disorder prediction 41 65 - -
Gso17g0848 471 MobiDBLite consensus disorder prediction 247 294 - -
Gso17g0848 471 PANTHER CYCLIC DOF FACTOR 2 1 470 IPR045174 GO:0003700|GO:0006355
Gso17g0848 471 MobiDBLite consensus disorder prediction 261 294 - -
Gso17g0848 471 MobiDBLite consensus disorder prediction 356 374 - -
Gso17g0848 471 MobiDBLite consensus disorder prediction 87 117 - -
Gso17g0848 471 Pfam Dof domain, zinc finger 117 174 IPR003851 GO:0003677|GO:0006355
Gso17g0848 471 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Gso17g0848 471 PANTHER CYCLIC DOF FACTOR 1 1 470 - -
Gso17g0848 471 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Gso17g0848 471 MobiDBLite consensus disorder prediction 1 117 - -
Gso17g0848 471 Coils Coil 22 42 - -
Gso17g0848 471 MobiDBLite consensus disorder prediction 375 391 - -
Gso17g0848 471 MobiDBLite consensus disorder prediction 356 404 - -
Gso17g0848 471 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0848 Gso-Chr17 7954732 7958016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0848 1 469 C2C2-Dof Transcription Factor Family AT3G47500 50.412 2.88e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso17g0848 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0848 - - gmx:778113 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0215 5 2258870 2261657 Gso17g0848 17 7954732 7958016 GST
Gso1g0425 1 5819618 5823193 Gso17g0848 17 7954732 7958016 PCT
Gso2g0912 2 10409080 10412831 Gso17g0848 17 7954732 7958016 PCT