Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0690 ATGCAGCAAATACACTCCATGCCCGGAGGGAGGTTTTTCTCCGGCTCCGGATCCGCCGACCGGAGGCTCCGACCCCACCATCAGAACCAGCAGGCCTTAAAGTGCCCCCGCTGCGACTCTCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAGAACTGCCGCCGCTATTGGACTAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGCAAATCCAAACGCTCCTCCAAGCCCAACAAAATAACACCCTCTGAAACCGCTTCACCGCCACCACCCCCGCACCCCGACCACAACAACAACTCCAACTCTCATTCCAGCAGCGAGAGCTCCAGCCTCACCGCCGCCGTTGCCACCACCACCGAGGCCGTGTCGGCGCCGGAGACTTTAAACTCTGATTCCAACAACAACAACAACATGCAAGAGTCAAAGTTGTTGATCCCTGCTCTGGAAACTAATAATCCTCTGGAGCAGGGAACAGGGGACTGCGGTGGTATCTTCTCTGAAATTGGTCCTTTCACCAGTTTGATCACTACTACTACTTCCACTAATGAACCTTTAGGGTCAGGGTTCGGGTTCGGTAACTCCACTCTCCCCGATGCGTCGTCGTTTCAGTGGCACTACCAGAAGGTTAGCAGTAACAACGAAGAATTGAAGTTGCCGGAGAACTCCTTTCTCGATCACACCGTTGATTTGTCGGGGATGCATAGTAAAACCAGCCACGGGGGAGGATTCGGATCGTTGGATTGGCAGGGCGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTTCTCTCTTTCATCTTCCCTGA 903 0.5426 MQQIHSMPGGRFFSGSGSADRRLRPHHQNQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPNKITPSETASPPPPPHPDHNNNSNSHSSSESSSLTAAVATTTEAVSAPETLNSDSNNNNNMQESKLLIPALETNNPLEQGTGDCGGIFSEIGPFTSLITTTTSTNEPLGSGFGFGNSTLPDASSFQWHYQKVSSNNEELKLPENSFLDHTVDLSGMHSKTSHGGGFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSSLFHLP* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0690 300 MobiDBLite consensus disorder prediction 77 133 - -
Gso17g0690 300 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
Gso17g0690 300 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 8 290 - -
Gso17g0690 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 290 IPR045174 GO:0003700|GO:0006355
Gso17g0690 300 MobiDBLite consensus disorder prediction 1 32 - -
Gso17g0690 300 MobiDBLite consensus disorder prediction 111 133 - -
Gso17g0690 300 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677|GO:0006355
Gso17g0690 300 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0690 Gso-Chr17 6364751 6366230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0690 20 300 C2C2-Dof Transcription Factor Family AT5G60850 42.088 1.50e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso17g0690 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0690 - - gmx:778097 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0148 5 1604493 1606085 Gso17g0690 17 6364751 6366230 GST
Gso17g0690 17 6364751 6366230 Gso4g1332 4 38298034 38299738 PCT
Gso4g1332 4 38298034 38299738 Gso17g0690 17 6364751 6366230 PCT