Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1162 ATGCCGTCGTCGAATTCCGGCGAGAGCCGCCGAGCGAGCAAGCCGCATCGATCGGTGGCGGCGCCGCCGGTCGAGCCAGAGAACCTCCCCTGCCCGCGGTGCGACTCCGCCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCCGTCGGCGGAGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACGCCGCCGCCGCCACATCGTCGTCCTCCTCCACCTCCTCCGCCACGACGTCAGCGCACGAACACCACAACGCGCACACGTTAACCGCATTGGCTCCCGTTACCGCCGCCACGCACTTCGGACATGACGGCGACGTCAAACAGACTAACGGTAACGCTTGCGGGAGCTACACTTCGTTGCTGAACAACACCCAGGGCTCCGGGTTTTTCGCCCTCGGTGGGTTTGGGCTTGGGCTTGGACACGGGTTTGACGACATGGGCTTTGGCATTGGGAGGTCGGGCTGGGCATTCCCCGGAATGGTGGACAATGGCAACATTGGCGGCGCCATTGCGTCTTCTGGAGTCAACACGTGGCAGTTAGAGAGTGGCGAAGGTGGGTTCGTTGGCGGAGATTGCTTCTCTTGGCCTGGGCTTGCGATTTCAACACCGGGAAATGGTCTCAAATGA 711 0.6301 MPSSNSGESRRASKPHRSVAAPPVEPENLPCPRCDSANTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHAAAATSSSSSTSSATTSAHEHHNAHTLTALAPVTAATHFGHDGDVKQTNGNACGSYTSLLNNTQGSGFFALGGFGLGLGHGFDDMGFGIGRSGWAFPGMVDNGNIGGAIASSGVNTWQLESGEGGFVGGDCFSWPGLAISTPGNGLK* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1162 236 MobiDBLite consensus disorder prediction 1 30 - -
Gso16g1162 236 MobiDBLite consensus disorder prediction 70 112 - -
Gso16g1162 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 233 IPR045174 GO:0003700|GO:0006355
Gso16g1162 236 MobiDBLite consensus disorder prediction 88 112 - -
Gso16g1162 236 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Gso16g1162 236 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 233 - -
Gso16g1162 236 Pfam Dof domain, zinc finger 28 83 IPR003851 GO:0003677|GO:0006355
Gso16g1162 236 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1162 Gso-Chr16 30819257 30820438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1162 1 236 C2C2-Dof Transcription Factor Family AT3G50410 48.062 1.39e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso16g1162 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1162 - - gmx:778099 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0520 2 5561057 5562384 Gso16g1162 16 30819257 30820438 GST