Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0186 ATGGAGGGGATGGCTCCCAATTCATGTGCAAGGCCAGTTGTAGAGAAGAAAGCAAGGCCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACCAATACAAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCAGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCTCTGTGACAGCTTCATCATCACCAAAGGTTCCAGACCTAAACCCACCAAACCACTCAGCTATCTCATCACACAACCCTAAAATAATGCATGGTGGCCAAGATCTCAATCTTGCTTTCCCAGCCATGGAAAAGTACCATCATCATGGCATGTCACCTTATAACGTTGAGATGCAAAACAGTAACACCACCACTACTCATCATCATCACCAAACCTCTCCTTCTTGTTCTGCTCCTCCAGCTAATTCTCTTTCAGCTCTTGAGCTACTTAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTAATTCTTCCTTGATGCCAAACTCAACAAACAACAACAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTTAAACCTAGTCTTAACTTTTCTTCAGTTGATGGGATCGGAAATAATAGATCATATGATCAAGAGAGGGGTGGTGGCAGAGTTTTGTTCCCTTTTGGAGACGTCAAACAGCTTTCTGCTGCTGCAGGTGCTGCTGATCAAGTGGAACAACAACAACAAGGAAATTCAACTGGTTATTGGACTGGAATGATTGGTGAAGGAACATGGTAA 831 0.4428 MEGMAPNSCARPVVEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVSVTASSSPKVPDLNPPNHSAISSHNPKIMHGGQDLNLAFPAMEKYHHHGMSPYNVEMQNSNTTTTHHHHQTSPSCSAPPANSLSALELLRSSMASRGLNPYAPNSSLMPNSTNNNNNALYPSGFPMQEVKPSLNFSSVDGIGNNRSYDQERGGGRVLFPFGDVKQLSAAAGAADQVEQQQQGNSTGYWTGMIGEGTW* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0186 276 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Gso16g0186 276 MobiDBLite consensus disorder prediction 77 95 - -
Gso16g0186 276 MobiDBLite consensus disorder prediction 132 160 - -
Gso16g0186 276 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Gso16g0186 276 MobiDBLite consensus disorder prediction 65 95 - -
Gso16g0186 276 MobiDBLite consensus disorder prediction 130 160 - -
Gso16g0186 276 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Gso16g0186 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 10 271 - -
Gso16g0186 276 MobiDBLite consensus disorder prediction 1 22 - -
Gso16g0186 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 271 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0186 Gso-Chr16 2117185 2119511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0186 16 276 C2C2-Dof Transcription Factor Family AT3G61850 48.601 2.18e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso16g0186 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0186 - - gmx:100793115 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0479 7 4749889 4752011 Gso16g0186 16 2117185 2119511 GST
Gso19g2167 19 50142971 50145051 Gso16g0186 16 2117185 2119511 PCT
Gso3g2207 3 47240860 47242950 Gso16g0186 16 2117185 2119511 PCT
Gso16g0186 16 2117185 2119511 Gso19g2167 19 50142971 50145051 PCT
Gso16g0186 16 2117185 2119511 Gso3g2207 3 47240860 47242950 PCT