Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso15g1970 | ATGGTTTTGATTGGGAGTCATAACCAATTTGTTGATAGTGTGTGTTCAATTGTGGTCAAGGGTCACTGGGGCAATCTGTTGAAGGTGAAGAATGCCTCTGCTCTCACTTCCTCTACCATTCACAAGGTTCTATTACAGCTCTCACTCTATGGTTATGGGCTCTCTCATTCCTTCCCATTCTTCAAATGGCTTGACTCCATCCCACATTATAGCCATTCCTTGCAATGTTCATGGGCCACGATTCACATCCTCACCAAACATAAGCATTTCAAAACTGCACAACATGTGCTTGAAAAAATTGCCCACAAGGATTTTCTTTCATCTCCTTCAGTTTTGAGCACTTTGGTGAGGACTCATGACAACCAGGAAGTTAATTCTCAAGTTTTGAGCTGGCTTGTCATACATTATGCCAAGTCAAAGATGACACAGGATGCAATTCAAGTTTTTGAGCAGATGAGGTTACATGAAGTCAAACCTCATTTGCATGCTTGTACTGTTCTTTTGAATTCCTTGTTGAAGGATGGGGTTACTCACATGGTGTGGAAAATTTACAAGAGGATGGTTCAAGTTGGGGTTGTTCCCAATATTTACATTTACAATTGTTTATTCCATGCTTGTTCAAAATCAGGAGATGTGGAAAGGGCAGAACAGTTATTAAATGAGATGGATGTTAAGGGTGTGCTTCAGGATATCTTCACATACAATACTTTGTTATCGTTGTATTGCAAGAAAGGTATGCACTATGAGGCTTTATCCATCCAGAACAGAATGGAAAGAGAGGGGATAAACCTTGATATTGTTAGTTATAACTCTCTTATTTATGGATTTTGTAAAGAAGGCAGGATGAGAGAAGCTATGAGGATGTTTAGTGAAATAAAAAATGCAACTCCCAATCATGTGACATATACTACATTGATTGATGGTTATTGTAAAACAAACGAACTGGAAGAAGCTCTGAAAATGTGCAAACTGATGGAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTCTGCGCAAGCTGTGTCGAGATGGCAGGATAAGGGATGCAAACAAACTGTTGAATGAAATGAGTGAAAGGAAACTTCAAGCTGACAATATCACATGCAACACACTAATTAATGCTTACTGCAAGATTGGAGATTTGAAGTCAGCTTTGAAATTTAAGAACAAGATGTTAGAAGCTGGTCTAAAACCTGATCCATTTACATATAAGGCACTGATTCATGGGTTCTGCAAGACAAATGAGCTGGAAAGTGCAACGGAGTTAATGTTCAGCATGCTTGATGCTGGATTTACCCCCAGTTATTGTACGTATTCATGGATTGTAGATGGCTACAATAAGAAAGACAATATGGATGCAGTTTTAGCCCTTCCAGACGAGTTTCTGAGTAGAGGAATTTGTCTTGATGTTTCAGTATACAGGGCATTGATAAGAAGGTCATGCAAGGTAGAAAGGATTCAATGTGCTGAAAGGTTATTCTATCATATGGAAGGAAAGGGTATATCAGGTGAAAGTGTTATCTACACCAGTATTGCATATGCTTATTGGAATGTGGGGAATGTAAGTGCTGCCTCAAGTATGCTAGAAGAGATGGCTAGGAGAAGGTTGATGATAACAGTCAAACTTTATAGATGCTTTAGCACATCTGATGCTAATGAAAACAAAGTGTCACAGATCTTCTGGAATCATGTGATGGATAGGGGTCTGATGTCGAGAAATACAATGAATAAAATACAGCAGAAGCTGATATGA | 1764 | 0.3883 | MVLIGSHNQFVDSVCSIVVKGHWGNLLKVKNASALTSSTIHKVLLQLSLYGYGLSHSFPFFKWLDSIPHYSHSLQCSWATIHILTKHKHFKTAQHVLEKIAHKDFLSSPSVLSTLVRTHDNQEVNSQVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCRDGRIRDANKLLNEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESATELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRALIRRSCKVERIQCAERLFYHMEGKGISGESVIYTSIAYAYWNVGNVSAASSMLEEMARRRLMITVKLYRCFSTSDANENKVSQIFWNHVMDRGLMSRNTMNKIQQKLI* | 588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Gso15g1970 | 587 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 6 | 583 | - | - | |
| Gso15g1970 | 587 | Pfam | PPR repeat family | 368 | 416 | IPR002885 | - | |
| Gso15g1970 | 587 | Gene3D | Tetratricopeptide repeat domain | 324 | 431 | IPR011990 | GO:0005515 | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 229 | IPR002885 | - | |
| Gso15g1970 | 587 | Gene3D | Tetratricopeptide repeat domain | 186 | 323 | IPR011990 | GO:0005515 | |
| Gso15g1970 | 587 | Gene3D | Tetratricopeptide repeat domain | 432 | 586 | IPR011990 | GO:0005515 | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Gso15g1970 | 587 | Pfam | Pentacotripeptide-repeat region of PRORP | 126 | 284 | IPR033443 | - | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 295 | IPR002885 | - | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Gso15g1970 | 587 | Gene3D | Tetratricopeptide repeat domain | 24 | 185 | IPR011990 | GO:0005515 | |
| Gso15g1970 | 587 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 6 | 583 | - | - | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 125 | 159 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 405 | 438 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 368 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 163 | 196 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 197 | 228 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 300 | 333 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 267 | 293 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 232 | 265 | IPR002885 | - | |
| Gso15g1970 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 370 | 403 | IPR002885 | - | |
| Gso15g1970 | 587 | Pfam | PPR repeat | 510 | 539 | IPR002885 | - | |
| Gso15g1970 | 587 | Pfam | PPR repeat | 476 | 505 | IPR002885 | - | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - | |
| Gso15g1970 | 587 | Pfam | PPR repeat | 328 | 361 | IPR002885 | - | |
| Gso15g1970 | 587 | Pfam | PPR repeat | 294 | 326 | IPR002885 | - | |
| Gso15g1970 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso15g1970 | Gso-Chr15 | 44300061 | 44305732 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso15g1970 | 15 | 44300061 | 44305732 | Gso11g2288 | 11 | 38791422 | 38797252 | GST |