Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1945 ATGGGGAGTAGAACTACCAGGAGGGTTGTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTCCAATTCTGAGTTACCCATTTCCAATTCATGCTATACAGAGGAGAGCACAATTGATTCTTTTCATGTTTCTGACTTTGGAGCATTTGATCAGTCATATCGAATAGGGGATGCTGTTGACCTCAGTGGAAACCCAGTTTACAATTCACTAAAAGTAAACAGCCAAACAATTTCTCCAGGTTCTGTTCACATTAGTAGTCTTGGTCAGTTGCCAACTTCACTTGAAAAAAGCCCATTGACAAATCAAATAGAGCCGCATAGGTTACGATTACAGAAGGTTCAATCATCAAATCCTGGCACAATATTAGTTGGTAATACAGATAACCAGGAGGAGTCTGCCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCAGCCGTATGATAGAAATGAAGCCCTTGCTGCTGTTTCCGACTCTAGTGACAGATCGAAAGACAAATCAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAACCGTGAAGCTGCCAGAAAAAGCCGCTTGCGAAAGAAAGCGTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAACAAGAGCTTCAGCGAGCTAGGCAGCATGGGATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTGAAAGCTGCTGTAAACTCTCATGCAAGTGACACTGAACTTCGCATGATCGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGTTAGTCAATTGGAGCCTCTCACAGAGCAGCAGCTGATGGGTATTACCAACTTGCAGCAATCCTCCCAACAAGCAGAAGATGCATTATCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCAGAGACATTGTCCACCGGAGCACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCAACAGGCTGACAATCTTCGCCAACAAACTCTTCAACAAATGCACCGTATACTGACAACTCGCCAATCAGCTCGTGCACTCCTTGCTATACATGACTACTTTTCGCGTCTGCGTGCTCTCAGTTCACTCTGGCTTGCTCGCCCTAGAGATTGA 1407 0.4534 MGSRTTRRVVGVEDDKGAERGMPSSNSELPISNSCYTEESTIDSFHVSDFGAFDQSYRIGDAVDLSGNPVYNSLKVNSQTISPGSVHISSLGQLPTSLEKSPLTNQIEPHRLRLQKVQSSNPGTILVGNTDNQEESAMADASPRTDISTDGDTDDKNQPYDRNEALAAVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQHGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELKAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIQQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1945 468 CDD bZIP_HBP1b-like 183 235 - -
Gso15g1945 468 SMART brlzneu 179 242 IPR004827 GO:0003700|GO:0006355
Gso15g1945 468 Pfam bZIP transcription factor 183 223 IPR004827 GO:0003700|GO:0006355
Gso15g1945 468 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700|GO:0006355
Gso15g1945 468 MobiDBLite consensus disorder prediction 114 161 - -
Gso15g1945 468 Coils Coil 259 279 - -
Gso15g1945 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Gso15g1945 468 Coils Coil 202 229 - -
Gso15g1945 468 Pfam Seed dormancy control 265 341 IPR025422 GO:0006351|GO:0043565
Gso15g1945 468 MobiDBLite consensus disorder prediction 171 185 - -
Gso15g1945 468 MobiDBLite consensus disorder prediction 147 161 - -
Gso15g1945 468 MobiDBLite consensus disorder prediction 1 32 - -
Gso15g1945 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Gso15g1945 468 ProSiteProfiles DOG1 domain profile. 248 465 IPR025422 GO:0006351|GO:0043565
Gso15g1945 468 PANTHER TRANSCRIPTION FACTOR TGA9 61 468 - -
Gso15g1945 468 MobiDBLite consensus disorder prediction 166 185 - -
Gso15g1945 468 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 61 468 - -
Gso15g1945 468 Gene3D - 182 231 - -
Gso15g1945 468 MobiDBLite consensus disorder prediction 114 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1945 Gso-Chr15 43564390 43573236 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso15g1945 DOG1 1.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1945 15 43564390 43573236 Gso11g2255 11 38322125 38335674 GST