Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1911 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAGGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTACTAGGTCATGCATGGGAAGGAATGAACCAGGAAATGAGAGTGAAGATCATGGAAGTACATCAAACTGGGTCATTCATGAGAAGGAAGATTATGTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGGGTTCCTGACTACGGCCATGGCCATGGCCATGCTGAGGCTGGTCCTGATGATCGGGTCATTACAAAAAGAAGGAAAGCTATTGGTGATGATGGTAATGACAGCGATGAAGAGGCTAAGAGGAGCAAGATGCTTGAGTTGGGCCACACTGGCAGTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTTTAAATAGAGAGACATATCATCAAGATGCTGAATCTGAGCCTTGCACTTCTGTTCAGCCGAGCAACCCACAAAATACAAACACAAGTATAGCAATGGATAATGGTTCTGAGTCAAAGGAGATACCAAAGGAGGAGAATATTGCAGCTCCCGTTGTTCCTGTTGTAAGCACGGATTCCCTCCGGAACATTGATCTGAATGCCATCACGAATGAAAACGATGACAAAAAGGCTAGTGCAGAAGCTGATGCCTCCGCCTCGGTGCCTGAACCTGATGCCTCATTGCCTGAACCCCCAACAGAGAGCAAGCATGAAGAAATTCCGGGGTGGTCACTTTCTGATGTGGACAAGATGGCCATTGATTCACTGCAGCTTGCACAACTTGGTAGGCCACTAGAAGAGGAGGAGGAAGACTATGATGAAGAGGAGGGGTAA 996 0.4639 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLLGHAWEGMNQEMRVKIMEVHQTGSFMRRKIMLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGPDDRVITKRRKAIGDDGNDSDEEAKRSKMLELGHTGSTGRGRGRGRGRGRGRGRPPLNRETYHQDAESEPCTSVQPSNPQNTNTSIAMDNGSESKEIPKEENIAAPVVPVVSTDSLRNIDLNAITNENDDKKASAEADASASVPEPDASLPEPPTESKHEEIPGWSLSDVDKMAIDSLQLAQLGRPLEEEEEDYDEEEG* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1911 331 MobiDBLite consensus disorder prediction 284 298 - -
Gso15g1911 331 PANTHER HISTONE SUPERFAMILY PROTEIN 1 67 - -
Gso15g1911 331 PANTHER HISTONE SUPERFAMILY PROTEIN 97 329 - -
Gso15g1911 331 MobiDBLite consensus disorder prediction 144 299 - -
Gso15g1911 331 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
Gso15g1911 331 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 97 329 - -
Gso15g1911 331 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 67 - -
Gso15g1911 331 MobiDBLite consensus disorder prediction 311 331 - -
Gso15g1911 331 MobiDBLite consensus disorder prediction 199 223 - -
Gso15g1911 331 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 67 IPR003958 -
Gso15g1911 331 MobiDBLite consensus disorder prediction 144 162 - -
Gso15g1911 331 SUPERFAMILY Histone-fold 4 67 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1911 Gso-Chr15 42181281 42189216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1911 1 317 CCAAT-HAP5 Transcription Factor Family AT3G12480 43.844 5.03e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso15g1911 CBFD_NFYB_HMF 1.7e-17 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1911 15 42181281 42189216 Gso11g2226 11 37963862 37972769 GST