Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1905 ATGGATGCAACACTACTCAATGTGAAATCAGTATATTCCTTTGCTGTCCTGCTATTGCTAAGCATCAAATCACTTGATACAAAGGCACAATCACCCAACTACATGGGAGATGACTGCCATAACACCACCCAAAAACCTCTCAGCGGTGAATACCAAACCAACCTTAACAGCATACTCTCATGGCTATCCACAGATGCAGCCACAAGCAAAGGTTATAACCACTACAGCTTTGGCAACAGCACCTCTGGAAATCATGCTGTGTATGGCCTCTATGATTGCCGCGGCGACGTGGTTGGATACTTTTGCCAATTCTGTGTCTCTACTGCTGCCAGAGAAATTCTTCAGCGCTGCCCCAATGGAGTGTCTGCTTTCATATGGTATGATTTCTGCATGCTAAAGTACTCTAATGAAAACTTCTTTGGGAATGTTACAGTAGACCCATCATGGCATGTTGTTGGAACAAAAGATGTGTCTAGTGCAGAAGAGATTCAGAAAGGTGAAGATTTTATGAGAAGTTTGATCAGAAAAGCGACTCTGGTGACCAACCAGTTGTACTATATGGGTGGCTTCAATTTGAGTTCCTCTCAGAGAAGGTATGGCTTGGTGCAATGCAGTAGAGATCTCACAAATGAGGGGTGTAGACAATGTTTGGAGACCATGTTAGCACAAATTTCCAAATGTTGTGAAAAAAAGTTGGGGTGGTTTGCTGGGTCTGCAAGTTGTCTCATGAAGTATGATGACTACATGTTCTACCTTTTTCACAACCAATCATCTACAGTTCCTGAGGCATATAGAAAAATAGCTAAACAAGGGATTAAGATGTCAAAAATCTTGATCATTAGCTTCAGTGTGATTGGGTCAATAACTCTACTATGTTTCAGTGTTTATTGCTTCTGGTGCAGGAGTCGTCCTAGAAAAGATGGACTGATACCTCACACAGTTCGTCTATCCTCATATCAAAATGTTCAAACTGAGGAAACATTGAATCCAGACCTGCCTACAATCCCATTAATCGCAATTCAGCAGAGTACTGATAACTTTTCAGAAGCATCTAAACTAGGGGAAGGTGGATATGGCCCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCGGTCAAAAGACTCTCACAAGCTTCTGGTCAAGGCTCAGAAGAGTTCAAGAACGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAAAATGAAAAGATACTTGTATATGAGTATTTGTCGAATGCAAGTCTCAACTTTCACCTGTTTGATGATGAGAAGAAAAAGCAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCACGAGGACTCTCGACTTAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGATATGAATCCCAAAATATCAGATTTTGGACTGGCAAGAGCATTTTCAAAGGGCCAGAAACAAGCAAATACAAACCGAGTAATGGGCACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCGGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATTATTTGTGGGAAAAAGAACAGTGGATTCTATCTATCAGAATGTGGACAAGGTCTTCTTTTATATGCTTGGAAAATATGGTGTGCTGGAAAATTTTTGGAACTATTGGATCCAGTGCTGGAGGAATCTTGCATAGAGAGTGAAGTTGTGAAGTGCATACACATTGGTCTGTTGTGTGTTCAAGAAGATGCAGCAGATAGACCAAACATGTCCACTGTTGTTGTAATGCTAGCAAGTGACACAATGGTCCTTCCAAAGCCAAACCGACCAGCTTTTTCAGTTGGAAGAATGGCATTAGGGGATGCATCAACTTCAAAAAGTTCCAATAAACATTCTATTAATGATATAACAATATCTAACATTTTACCAAGGTAA 1998 0.3999 MDATLLNVKSVYSFAVLLLLSIKSLDTKAQSPNYMGDDCHNTTQKPLSGEYQTNLNSILSWLSTDAATSKGYNHYSFGNSTSGNHAVYGLYDCRGDVVGYFCQFCVSTAAREILQRCPNGVSAFIWYDFCMLKYSNENFFGNVTVDPSWHVVGTKDVSSAEEIQKGEDFMRSLIRKATLVTNQLYYMGGFNLSSSQRRYGLVQCSRDLTNEGCRQCLETMLAQISKCCEKKLGWFAGSASCLMKYDDYMFYLFHNQSSTVPEAYRKIAKQGIKMSKILIISFSVIGSITLLCFSVYCFWCRSRPRKDGLIPHTVRLSSYQNVQTEETLNPDLPTIPLIAIQQSTDNFSEASKLGEGGYGPVYKGILPDGRQIAVKRLSQASGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEENEKILVYEYLSNASLNFHLFDDEKKKQLDWKLRLSIINGIARGILYLHEDSRLRVIHRDLKASNVLLDHDMNPKISDFGLARAFSKGQKQANTNRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGKKNSGFYLSECGQGLLLYAWKIWCAGKFLELLDPVLEESCIESEVVKCIHIGLLCVQEDAADRPNMSTVVVMLASDTMVLPKPNRPAFSVGRMALGDASTSKSSNKHSINDITISNILPR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1905 665 SMART serkin_6 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1905 665 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 663 - -
Gso15g1905 665 Pfam Domain of unknown function (DUF3403) 620 665 IPR021820 GO:0004674
Gso15g1905 665 SUPERFAMILY Protein kinase-like (PK-like) 332 641 IPR011009 -
Gso15g1905 665 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Gso15g1905 665 Pfam Protein tyrosine and serine/threonine kinase 351 617 IPR001245 GO:0004672|GO:0006468
Gso15g1905 665 CDD STKc_IRAK 353 618 - -
Gso15g1905 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Gso15g1905 665 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Gso15g1905 665 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 20 663 - -
Gso15g1905 665 ProSiteProfiles Protein kinase domain profile. 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1905 665 Pfam Salt stress response/antifungal 190 248 IPR002902 -
Gso15g1905 665 Pfam Salt stress response/antifungal 39 136 IPR002902 -
Gso15g1905 665 Gene3D - 150 250 IPR038408 -
Gso15g1905 665 Gene3D - 33 139 IPR038408 -
Gso15g1905 665 Gene3D Transferase(Phosphotransferase) domain 1 423 625 - -
Gso15g1905 665 Gene3D Phosphorylase Kinase; domain 1 311 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1905 Gso-Chr15 41996040 41999718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1905 10 665 Receptor kinase-like Gene Family AT4G05200 42.563 4.33e-180 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso15g1905 PK_Tyr_Ser-Thr 7e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1905 15 41996040 41999718 Gso11g2223 11 37929181 37933351 GST