Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1898 ATGAGACAAATGAAGATAGATATTGAAGATGAGGTGCTTCCCAATGATATGAGTGGGACACAATTGAATGATGAGAGTTATGAAGGAGGTGCTGGCATTGTTCTGAAGAAAGGGCCATGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACCGGGTTGTTACGTTGCGGAAAAAGTTGTCGGCTGCGGTGGGCTAATCACCTAAGGCCGAATTTAAAGAAAGGGGCGTTTACCGCAGAAGAGGAGCGGGTGATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCGCATTTGCCTGGTCGCACAGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAAAGGTGTCAAAGGGCTGGGTTGCCACTTTATCCTCCAGAAGTGAGTTTGCAAGCTTTGCAAGAGAGCCAGCATAGCCAAAGCTCTGGTGGACTTAATGGTGGCGAAAAAATGCATCCTGATTTCTTGCAGAAAAACAGTTTTGAGATACATGATGGTATATTTGACAGTCTGAAGGATAATCAGGGAATCTTACCTTATGTGCACGGGCTTTCTGATATTTCTGTTTATGGCAATATGCTAAAAGGTCTTGATTCTTCTCAGTATTGTAGTTTTGTGCCACCAACATTACCTAAGTGTAAGCGTCTTAAAGAGTCAACAATACCATTTATCGATTCCTGTGATATGAAAAAATATGATTTATATTCATTTGATCAAATTCGAGACAATAATTCTAATAAGATTGCACAATCATTTGGAATGCAAGCACCCCTTGATCCTGGTCCCTCCTCGCACAGCTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCTTATGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTCGATTTAGGTAGCTGGGGTTCATCCCCCCCACCTTCTTTGCTCGAGTCAGTTGATGATTTCCTTCAGTCTCCTACACCAATCAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTATGAGCAGTTCAAAGAACCATTGTTCTGACAAGAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGCTGACAGCTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTATGCTGATCCTGTATCTCCCTTTGGTGCAACTTCAATATTGAATGAGTGCACTGGTCTTAGAGCCAATATGAATTCATTGAACGAACAGCTACCAGTTCAGACCATTACTGGCGACCTTCCAAATTTAGAGTCTGTTGACCAGGTTTGGACCCCTGACAGTGAAAATCAAACCTTGTCCCTGTTGAATAATACTTGTCCGGACTTCTTGCTTACTTCAGATTGGTATGACCTAGGTTCTGGGCATGGCAAGAACCAGGCTATCAGTACTGATGCTGCAACGGCCTTTCTTGGAGATGATTTAGCCACTGACCATAAATATATGACTGCTGGAACTTCTATAACTATGTTTGGAAATCCATTCTAG 1602 0.4307 MRQMKIDIEDEVLPNDMSGTQLNDESYEGGAGIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERVIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQRAGLPLYPPEVSLQALQESQHSQSSGGLNGGEKMHPDFLQKNSFEIHDGIFDSLKDNQGILPYVHGLSDISVYGNMLKGLDSSQYCSFVPPTLPKCKRLKESTIPFIDSCDMKKYDLYSFDQIRDNNSNKIAQSFGMQAPLDPGPSSHSSMCYSHSLSNGNSSTSKPYEAVKLELPSLQYPELDLGSWGSSPPPSLLESVDDFLQSPTPISTLESDCSSPQNSGLLDALLYQAKTMSSSKNHCSDKSSNSSTATPGDRADSSALNVYETEWEDYADPVSPFGATSILNECTGLRANMNSLNEQLPVQTITGDLPNLESVDQVWTPDSENQTLSLLNNTCPDFLLTSDWYDLGSGHGKNQAISTDAATAFLGDDLATDHKYMTAGTSITMFGNPF* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1898 533 Gene3D - 92 138 - -
Gso15g1898 533 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 527 - -
Gso15g1898 533 CDD SANT 39 84 IPR001005 -
Gso15g1898 533 Gene3D - 36 89 - -
Gso15g1898 533 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 527 - -
Gso15g1898 533 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
Gso15g1898 533 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Gso15g1898 533 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Gso15g1898 533 CDD SANT 92 133 IPR001005 -
Gso15g1898 533 MobiDBLite consensus disorder prediction 274 304 - -
Gso15g1898 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Gso15g1898 533 SMART sant 89 137 IPR001005 -
Gso15g1898 533 SMART sant 36 86 IPR001005 -
Gso15g1898 533 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Gso15g1898 533 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Gso15g1898 533 MobiDBLite consensus disorder prediction 378 400 - -
Gso15g1898 533 MobiDBLite consensus disorder prediction 282 304 - -
Gso15g1898 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Gso15g1898 533 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1898 Gso-Chr15 41633537 41638651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1898 32 525 MYB Transcription Factor Family AT5G06100 44.158 5.13e-120 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso15g1898 Myb_DNA-binding 9.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1898 15 41633537 41638651 Gso11g2213 11 37793088 37798465 GST
Gso4g1037 4 15802878 15808073 Gso15g1898 15 41633537 41638651 PCT
Gso6g2575 6 47513920 47519136 Gso15g1898 15 41633537 41638651 PCT
Gso15g1898 15 41633537 41638651 Gso4g1037 4 15802878 15808073 PCT
Gso15g1898 15 41633537 41638651 Gso6g2575 6 47513920 47519136 PCT