Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1886 ATGTCCTTCTTCAAATTTTACGGCAAGGTCGATGAAGCGGAGCACGCCATGCTCGAAGCTCGCCGCAAAACGCGAAAGCGAGTCACCATCATAGCCTTGTCCACAATAGTCCTCGTCGGAGTTGTGTGTGCTGCTGTATTTGGAACCGTTGCACACAACAACAACAACTCAAATAATGATGGTGTAAATAATGCACCATCTCTTTCCAATTCAGTGAAGGCTGTTTGTGACGTGACACTTTACAAGGGCGCGTGCTACAGTAGCCTTGGTCCTCTTGTGCACTCGGGTCAGGTTCGACCTGAGGAGTTGTTCTTGCTGTCTATTGAAGTTGCCCTAGCTGAGGCTTCAAGGGCTGTTGAGTATTTCTCTCAGAAGGGAGTTTTTAATGGCTTGAATGTTGATAATAGGACCATGGAGGGGTTTAAGAACTGCAAGGATCTTTTGGGTCTTGCGGTTGATCATTTGAATAGCTCTTTGGCTTCTGGGGGGAAATCTTCGTTGTTTGATGTCTTGGAGGATCTTAGAACATGGTTGAGTGCTGCAGGTACTTACCAGCAAACTTGCATTGATGGCCTTGAAGAGGCAAAAGAAGCCCTGAAGACCAGTGTTGTAAACAATCTAAAAAATTCTACAGAGTTCACCAGTAACAGTCTTGCCATTGTTACTTGGCTCAACAAGGCTGCAAGCACAGTGAACTTGAGGCGCTTGTTGAGTACTTTGCCACATCATATGGTAGAACCAAAGTGGCTTCATTCTAAAGACCGGAAGCTGCTTCAAAAAGATGATTTGAAGAGGAAAGCTCACATTGTTGTAGCAAAAGATGACAGCGGGAAATTTAAAACAATCACCGCTGCACTTAAACAAGTCCCTGATAATAGTGACAAGAGGACTGTGATCTATGTGAAGAAAGGAGTTTACGATGAAAATGTGAGAGTGGAGAAGACTAAATGGAATGTCATGATCATTGGTGATGGCATGAATGCCACAATTGTATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACCGCAACATTTGCTGTGTTTGGGAGGAATTTCATTGCTAGGGATATGGGATTTCGCAACACAGCTGGTCCACAGAAGCAACAGGCAGTGGCACTGATGACAAGTGCTGATCAAGCAGTTTATTACAGGTGCCAAATTGATGCATTTCAGGACTCTCTTTATGCTCATTCCAACCGCCAATTTTACAGAGAATGCAACATCTATGGCACAGTTGATTTCATTTTTGGCAATTCAGCAGTAGTCCTCCAAAACTGTAACATTATGCCAAGGGTGCCTATGCAGGGCCAGCAGAACACCATAACAGCACAGGGAAAAACTGACCCCAACATGAACACAGGAATTTCAATTCAAAATTGCAACATTACACCCTTTGGGGACTTGAGTTCTGTAAAAACATATCTTGGAAGACCCTGGAAGAACTACTCAACCACAGTGTTTATGCAATCCACAATGGGGAGTTTCATTCACCCAAATGGATGGTTACCATGGGTAGGGAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGAGTGAACTGGAAGGGTTTGAGAGTCATTACAAGGAAACAAGCTAGCATGTTTACTGTCAAGGCTTTTCTTTCAGGGGAGAGATGGATTACAGCTTCTGGTGCCCCCTTTAAATCTTCCATATGA 1725 0.4377 MSFFKFYGKVDEAEHAMLEARRKTRKRVTIIALSTIVLVGVVCAAVFGTVAHNNNNSNNDGVNNAPSLSNSVKAVCDVTLYKGACYSSLGPLVHSGQVRPEELFLLSIEVALAEASRAVEYFSQKGVFNGLNVDNRTMEGFKNCKDLLGLAVDHLNSSLASGGKSSLFDVLEDLRTWLSAAGTYQQTCIDGLEEAKEALKTSVVNNLKNSTEFTSNSLAIVTWLNKAASTVNLRRLLSTLPHHMVEPKWLHSKDRKLLQKDDLKRKAHIVVAKDDSGKFKTITAALKQVPDNSDKRTVIYVKKGVYDENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPQKQQAVALMTSADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNIMPRVPMQGQQNTITAQGKTDPNMNTGISIQNCNITPFGDLSSVKTYLGRPWKNYSTTVFMQSTMGSFIHPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVNWKGLRVITRKQASMFTVKAFLSGERWITASGAPFKSSI* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1886 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 226 IPR035513 -
Gso15g1886 574 CDD PMEI-like_3 74 226 - -
Gso15g1886 574 Pfam Pectinesterase 268 559 IPR000070 GO:0030599|GO:0042545
Gso15g1886 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Gso15g1886 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 68 224 IPR006501 GO:0004857
Gso15g1886 574 SMART PMEI_2 67 220 IPR006501 GO:0004857
Gso15g1886 574 Pfam Plant invertase/pectin methylesterase inhibitor 71 220 IPR006501 GO:0004857
Gso15g1886 574 Gene3D - 263 574 IPR012334 -
Gso15g1886 574 SUPERFAMILY Pectin lyase-like 266 570 IPR011050 -
Gso15g1886 574 PANTHER PECTINESTERASE 5 572 - -
Gso15g1886 574 PANTHER PECTINESTERASE 5 572 - -
Gso15g1886 574 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Gso15g1886 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 224 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1886 Gso-Chr15 41060117 41063390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1886 7 574 Carbohydrate Esterase AT3G10710 57.719 0.0 677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1886 15 41060117 41063390 Gso11g2201 11 37655219 37658978 GST
Gso6g2587 6 47653214 47656564 Gso15g1886 15 41060117 41063390 PCT
Gso15g1886 15 41060117 41063390 Gso6g2587 6 47653214 47656564 PCT