Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1824 ATGGAAAACCACATCTACGCCGCCTCTTACAGCCCTTCCACCAACTACAGATCCTTCCGTGACCCCCCCGCCGACACCATGTTCCTCTCCCACCATCTCCACCACCATCGCACCGACGCCTCCTCCGCCGCCGCCCTCCGCTTCCCCTCCTCGGCCCTCTCTGCCGTCGAAGCCGCCGATATTGCCCCGCCTGGCGTCACCTCCCGAATCGCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCGAATTTCCTCTCCACCTGGCCCCCTGCCGCCGCCGCCGCGCCCTCCGCCCTCGACCTCAAACGCTCTTCCGAGGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACCCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGCGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAATTTGACCATCCTGTTTGGGTTCCAGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCGGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCAAGGTTTCCTCTGAAAATGCTGATGTTTCTTCTGGCTTACCTGAGAGGCCATCTGAGCCCCCTTGCGCGTTCTACATGAAAACTGGAAAATGTAGATATGGCACTGCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTGACGACTTGAGTCAAAATGTTGCACAGACACAAACAAATTCTATGATGGGTGGAGCTACAGGAGATACACAGCCAATTAAATCTCTTATATCTCCGTCGTTGCAAAATAGCAAAGGGCTTCCAGTAAGACTGGGGGAAGTTGATTGTCCATTCTACATGAAAACTGGGAGTTGCAAGTATGGTGTCAGTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCCACCCATTGCTGGATTAGGTGCCTCTATTTTGCCATCCTCGGCTGCTAATCTGAATATTGGACTTCTTAATCCAGCTGTTTCTGCTTATCAAGCTTTTGAACCAAGGCTGTCAAATCCAATGGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCTGGACAGATTGAATGCGATTTTTATATGAAAACTGGCGTGTGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATTGACCGCTCAGCACTGTCACTGTCAAAGCAGGCTACTGTTAAACTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGATGTTATCTGTCCTTATTATTTAAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCAGCCAATGGAGAGGAAGCTGAAGGCGATACTTCTGCTCTGGAACAACTTTGA 1527 0.4925 MENHIYAASYSPSTNYRSFRDPPADTMFLSHHLHHHRTDASSAAALRFPSSALSAVEAADIAPPGVTSRIASSSAAAAAAANFLSTWPPAAAAAPSALDLKRSSEALYHPTILGTIGQSEAWYSTNPLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENADVSSGLPERPSEPPCAFYMKTGKCRYGTACKFHHPKDIQIQLSDDLSQNVAQTQTNSMMGGATGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGVSCRYNHPDRNAINPPIAGLGASILPSSAANLNIGLLNPAVSAYQAFEPRLSNPMVGIAETIYPQRPGQIECDFYMKTGVCKFGERCKYHHPIDRSALSLSKQATVKLTPAGLPRREGDVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSANGEEAEGDTSALEQL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1824 508 ProSiteProfiles Zinc finger C3H1-type profile. 198 226 IPR000571 GO:0046872
Gso15g1824 508 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Gso15g1824 508 SUPERFAMILY CCCH zinc finger 203 224 IPR036855 GO:0046872
Gso15g1824 508 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 91 492 - -
Gso15g1824 508 SUPERFAMILY CCCH zinc finger 146 173 IPR036855 GO:0046872
Gso15g1824 508 SUPERFAMILY CCCH zinc finger 403 429 IPR036855 GO:0046872
Gso15g1824 508 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Gso15g1824 508 ProSiteProfiles Zinc finger C3H1-type profile. 451 479 IPR000571 GO:0046872
Gso15g1824 508 PANTHER CCCH ZINC FINGER/TIS11-RELATED 91 492 IPR045877 GO:0003729
Gso15g1824 508 ProSiteProfiles Zinc finger C3H1-type profile. 240 268 IPR000571 GO:0046872
Gso15g1824 508 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Gso15g1824 508 SUPERFAMILY CCCH zinc finger 455 478 IPR036855 GO:0046872
Gso15g1824 508 Gene3D - 104 182 - -
Gso15g1824 508 Gene3D - 183 231 - -
Gso15g1824 508 SUPERFAMILY CCCH zinc finger 244 268 IPR036855 GO:0046872
Gso15g1824 508 SMART c3hfinal6 451 478 IPR000571 GO:0046872
Gso15g1824 508 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Gso15g1824 508 SMART c3hfinal6 401 428 IPR000571 GO:0046872
Gso15g1824 508 SMART c3hfinal6 198 225 IPR000571 GO:0046872
Gso15g1824 508 SMART c3hfinal6 240 267 IPR000571 GO:0046872
Gso15g1824 508 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Gso15g1824 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 455 478 IPR000571 GO:0046872
Gso15g1824 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 172 IPR000571 GO:0046872
Gso15g1824 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 404 427 IPR000571 GO:0046872
Gso15g1824 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 225 IPR000571 GO:0046872
Gso15g1824 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 267 IPR000571 GO:0046872
Gso15g1824 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 343 IPR000571 GO:0046872
Gso15g1824 508 MobiDBLite consensus disorder prediction 484 508 - -
Gso15g1824 508 Gene3D - 236 353 - -
Gso15g1824 508 Gene3D - 400 493 - -
Gso15g1824 508 SUPERFAMILY CCCH zinc finger 321 344 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1824 Gso-Chr15 36760981 36777499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1824 302 493 C2H2 Transcription Factor Family AT3G02830 33.679 1.64e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso15g1824 zf-CCCH 1.5e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1824 15 36760981 36777499 Gso8g1936 8 19317442 19324647 GST