Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1801 ATGGATTGTTCAGCTGCTAGAAAAACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGAATCAATGAACAGTTCGTAGAATTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTGTGTGATACAATTCAATTGCTGAAGGACCTAATTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTATGCTAAATGAAGAATCTCGTGAGTTGACTCTAGAGAAAACTGATCTCAGGGAAGAGAAGGCTTCTCTTAAATCAGATATTGACAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACCATGTTTCCATGGACTGCAATGGAGCATTCAGTTATGATGGCTCCATCATCGTATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATACCCCTTCTTTGCTAATCAACATCCTGCAGTCATCTCCAACCCCTGTTCAACTTATGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCTGTACGTATCCCCTCCACTTCATCCAGGTGCTCGGCCCAATGTGTCAGGAAAACAAGAGTCCAAGAGCAAGTCATCCAGGGAGAGCATGGTTGAAAAGAATGAGGAATCTAATGATGTCACTACAGACCTTGAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGATTTATCATCTGGACAAAGAAAATCTAGCAAGTTGTCAAGGAGGGAAAGCAGCTGCACTGAATGGAGTTCATTAGGTAGGTGTTCTTCTTGTAGCGTTCAGGACAGCTCATCAAGCAGTGTGGTGGCGAGCAGAAAGGATAACGAATGA 846 0.4338 MDCSAARKTQKADREKLRRDRINEQFVELGNILDPDRPKNDKATILCDTIQLLKDLISQVSKLKDEYAMLNEESRELTLEKTDLREEKASLKSDIDNLNNQYQQQLRTMFPWTAMEHSVMMAPSSYPYPVPMAVPPGPIPMQPYPFFANQHPAVISNPCSTYVPYLAPNTIVEQQSTLYVSPPLHPGARPNVSGKQESKSKSSRESMVEKNEESNDVTTDLELKTPGSSADQDLSSGQRKSSKLSRRESSCTEWSSLGRCSSCSVQDSSSSSVVASRKDNE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1801 281 PANTHER TRANSCRIPTION FACTOR BHLH121 1 279 IPR044579 GO:0003700|GO:0055072
Gso15g1801 281 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Gso15g1801 281 Coils Coil 53 108 - -
Gso15g1801 281 MobiDBLite consensus disorder prediction 198 219 - -
Gso15g1801 281 Gene3D - 5 82 IPR036638 GO:0046983
Gso15g1801 281 SMART finulus 12 62 IPR011598 GO:0046983
Gso15g1801 281 MobiDBLite consensus disorder prediction 220 239 - -
Gso15g1801 281 CDD bHLH_AtILR3_like 11 85 - -
Gso15g1801 281 PANTHER TRANSCRIPTION FACTOR BHLH121 1 279 - -
Gso15g1801 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Gso15g1801 281 MobiDBLite consensus disorder prediction 248 281 - -
Gso15g1801 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Gso15g1801 281 MobiDBLite consensus disorder prediction 181 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1801 Gso-Chr15 35684125 35688501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1801 1 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 61.111 2.08e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g1801 HLH 6.3e-09 No_clan