Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1769 ATGTTCCAACCTAACAACCCCAAAATGGATTCCTCCACCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTAAGACTCTTGCAACAACAACAGCAACAAAAAGAAGAACATCATTATTATGACTCTTCTTCACCTTTACCCGCTAAAAAACGCAAGGAGTCTCGAACCCTATCTCCACCCTCTCCCACCACCACCAAAACCGTTTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCTACAACCCCAGAGCCCACCCTCAAATGACGTCGTCCCCGCCTTCGACCTCAATGTGGAATACACACCCAGCCCCAACAACCACGGAGACTTCGAAGAAGACCACTCCGAGGACGAGGACGGGGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCACTCCCCTGTCCAAGTCCATCCCGGATGGAGACTGGTTCTGCGAACGCTGCTGTTTCCGTTTCGAGAAGAATGATGTTGGCAACATCAATTGCAATGCTTGCGTGCTGTGCCCTTCCACCGAGGGGGCGATGAAGCGGACCACCGCCGAGGAGGAAGGTGGCGCGACGTGGGCACACGTGGTGTGCGCCCTGTTCGTGCCGGAAGTGTTCTTTCTTGACCCCGAAGGGAGGGAGGGGATCGACTTCTCCAAGGTTCCAAAGAAGAGGTGGGAGGAGAGGTGCTATCTTTGCGGATCCTGCGAAGGGTGTGCTTTGGTGTGTTCTGAGCCCAAGTGCGGGTTGGGGTTTCATGTCACTTGTGCGCTGAAGGAGGAACTTTGGATTGAGTACAGGGAAGGGAAGAAGGGTGGTACCATAGTTGCCGGCTTCTGCAAAAAGCACACCCAAGTTTGGGAAAAGCAATCCGGGAAGTACAAAATTGTTGCTGTTGAAGATAAAAAGTAG 972 0.5381 MFQPNNPKMDSSTTFLNDLPPLKRLRLLQQQQQQKEEHHYYDSSSPLPAKKRKESRTLSPPSPTTTKTVYNYSLPAKKRVWALQPQSPPSNDVVPAFDLNVEYTPSPNNHGDFEEDHSEDEDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGTPLSKSIPDGDWFCERCCFRFEKNDVGNINCNACVLCPSTEGAMKRTTAEEEGGATWAHVVCALFVPEVFFLDPEGREGIDFSKVPKKRWEERCYLCGSCEGCALVCSEPKCGLGFHVTCALKEELWIEYREGKKGGTIVAGFCKKHTQVWEKQSGKYKIVAVEDKK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1769 323 ProSiteProfiles Zinc finger PHD-type profile. 123 176 IPR019787 -
Gso15g1769 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 118 321 - -
Gso15g1769 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 111 - -
Gso15g1769 323 MobiDBLite consensus disorder prediction 30 57 - -
Gso15g1769 323 MobiDBLite consensus disorder prediction 1 69 - -
Gso15g1769 323 CDD PHD_BRPF_JADE_like 125 173 - -
Gso15g1769 323 MobiDBLite consensus disorder prediction 1 18 - -
Gso15g1769 323 Pfam PHD-zinc-finger like domain 189 303 - -
Gso15g1769 323 SMART PHD_3 125 174 IPR001965 -
Gso15g1769 323 SMART PHD_3 249 304 IPR001965 -
Gso15g1769 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 185 IPR013083 -
Gso15g1769 323 SUPERFAMILY FYVE/PHD zinc finger 112 179 IPR011011 -
Gso15g1769 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 306 IPR013083 -
Gso15g1769 323 Pfam PHD-finger 126 174 IPR019787 -
Gso15g1769 323 PANTHER PHD FINGER PROTEINS 118 321 - -
Gso15g1769 323 PANTHER PHD FINGER PROTEINS 14 111 - -
Gso15g1769 323 ProSiteProfiles Extended PHD (ePHD) domain profile. 187 304 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1769 Gso-Chr15 33530283 33532620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1769 24 323 C2H2 Transcription Factor Family AT3G14740 48.680 1.52e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso15g1769 zf-HC5HC2H_2 5.3e-26 CL0390