Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0654 ATGTCGGCTAACTGTGAGAAAATGGTAGCCATCCCTCCAACGACCAACCAATGGCTACAGGTGGATGATCACAAGGTCTTGATGGGTTCCAATGGTGGAAGTAGTAACAATAATAAGGTAATGGAAAAACCAGGTCAAAATCAACTTGTGCAGCAGCAGCAACATCCAGAAACCCTCAAGTGCCCTCGTTGTGACTCATCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCTAGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGAAACGTTCCTGTTGGTGGAGGCTGCAGAAGAAACAAGCGTGTAAAGCGTCCAATAACAAGCCCTTGTTCTGCCGCCATTGACACTGCTTCTAATTCTTCTAACTCTTCTTCTGCTCCCACTGCTGCTGCTTCACTACAACCCCAGATCGACACTGCTTCAACCTCAAATCACATCAACCCTTTGTTCTATGGATTACCAAGTAGCTCTAGCGATGTGAATCTTCCATTGTTCTCTAGGTTCGGTTCTAGAATCTCCAGTTCCGGGTTTGATCTTCAGTTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTTTGTCCAATGAAGCTAGTGATAATAACGGTTACAGAAGCGGGTTTGGTTCAAACAATATGCTTCTTTCAAGTTATACATCCACTACTACTACTACTCCAGCTATGTCTTCTCTTTTGCTTCAACAGAAGTTCATCAGTGGTGGATTGAAAAATGATGCTGATAGCAGCAACACTTTCCAGCATGGCTTAAGCTTAACCTCACTAGAGCAGTTGCAAATAGCAAGTGATCATAGCAGTGAGGCAGGGATGGTGGCATTAAAAGATGTGAAAGTAGAATTAGGACAAAACAACAACAGGTTGGAGTGGAATGGTGGTGCTTTCCAAAGCCAGATCCAGCATGTGGGCTTGTACGATCCTTTGCTTTATTGGAATAATTCAGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCTAATATTGGTTCATCAGTCACTTCTCTGATCTAG 1062 0.4407 MSANCEKMVAIPPTTNQWLQVDDHKVLMGSNGGSSNNNKVMEKPGQNQLVQQQQHPETLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRVKRPITSPCSAAIDTASNSSNSSSAPTAAASLQPQIDTASTSNHINPLFYGLPSSSSDVNLPLFSRFGSRISSSGFDLQLNNALGLGFSSGVLSNEASDNNGYRSGFGSNNMLLSSYTSTTTTTPAMSSLLLQQKFISGGLKNDADSSNTFQHGLSLTSLEQLQIASDHSSEAGMVALKDVKVELGQNNNRLEWNGGAFQSQIQHVGLYDPLLYWNNSATALGVWNDQAANIGSSVTSLI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0654 353 Pfam Dof domain, zinc finger 58 113 IPR003851 GO:0003677|GO:0006355
Gso15g0654 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 337 IPR045174 GO:0003700|GO:0006355
Gso15g0654 353 MobiDBLite consensus disorder prediction 125 148 - -
Gso15g0654 353 ProSitePatterns Zinc finger Dof-type signature. 61 97 IPR003851 GO:0003677|GO:0006355
Gso15g0654 353 ProSiteProfiles Zinc finger Dof-type profile. 59 113 IPR003851 GO:0003677|GO:0006355
Gso15g0654 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 3 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0654 Gso-Chr15 5834082 5836213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0654 59 353 C2C2-Dof Transcription Factor Family AT1G28310 39.103 2.00e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso15g0654 zf-Dof 6.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0654 - - gmx:100801049 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0654 15 5834082 5836213 Gso15g0654 15 5834082 5836213 ECH
Gso15g0654 15 5834082 5836213 Gso11g2641 11 42383122 42385376 GST
Gso7g1686 7 38904521 38909368 Gso15g0654 15 5834082 5836213 PCT
Gso15g0654 15 5834082 5836213 Gso7g1686 7 38904521 38909368 PCT