Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0613 ATGGGTTTGAGTTCTAAGCAGGTTTCTAATAGAGGACTTGATTGGAACCAAACCTTGTTGCAGGCTCAAAACTTGGAACTCCCAAATCCTCCTCCTATGAGGAAACAACAACAAACTCAGCCATCAGAGCCTTTGAAGTGTCCAAGATGTGATTCTATTAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAACCTCGACATTACTGCAGAGCTTGCAAGAGGCATTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGAAGGAAGAATAAGCGAGTCAAGAAATCAACCACTCCAGCGATAGCCACCACTTCTATTAGTACCAGCACCTCAAATGCCAACATGGATGGTGAGTTGAATAACCCCATCACCATTCCTTCTCTAGCAGTGGATGATCACAAAACCACACCTTCCTCTCTCTATCAATATGTGTGCCTGCCCCAACAGAATCTGATGAGTACCAAAGACTCAGAAGAAGGCAAAGACTTTGGTATTGGTAATGGCATCTTCCTGAGTTCAACTGTGCCTTTTCCTCAAAGCCAAAGCCTTCTGTTCCCCTTCACAACATCAAACTCCTTTGACCCAAACCTATGTGCAATATCATCCTCTTTTCGATCCTCCAGTGTGTATAACTATGGTGAAGAGTTTAAAATAATGGAGGAGCCAACCCTCAACAGCATAATGCCCAACACTAGTGGAAGCACCAACACACAACCATGGGAGATAGCTGCAACAAGTTCTGGCATGGAAATGTCAAATTATTGGACTTGGGAGGACATTGATTCGTTTGTGTCAACTGATCCAAATGTTCCTTGGGATGATTCTGATATCAAACCCTGA 858 0.4336 MGLSSKQVSNRGLDWNQTLLQAQNLELPNPPPMRKQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTPAIATTSISTSTSNANMDGELNNPITIPSLAVDDHKTTPSSLYQYVCLPQQNLMSTKDSEEGKDFGIGNGIFLSSTVPFPQSQSLLFPFTTSNSFDPNLCAISSSFRSSSVYNYGEEFKIMEEPTLNSIMPNTSGSTNTQPWEIAATSSGMEMSNYWTWEDIDSFVSTDPNVPWDDSDIKP* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0613 285 Pfam Dof domain, zinc finger 44 97 IPR003851 GO:0003677|GO:0006355
Gso15g0613 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 195 IPR045174 GO:0003700|GO:0006355
Gso15g0613 285 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Gso15g0613 285 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Gso15g0613 285 MobiDBLite consensus disorder prediction 25 45 - -
Gso15g0613 285 PANTHER OS06G0284500 PROTEIN 16 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0613 Gso-Chr15 5466076 5468415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0613 30 174 C2C2-Dof Transcription Factor Family AT5G60200 41.975 3.18e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso15g0613 zf-Dof 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0613 - - gmx:100806358 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0613 15 5466076 5468415 Gso11g2682 11 42771795 42773945 GST
Gso7g1644 7 38424534 38426512 Gso15g0613 15 5466076 5468415 PCT
Gso15g0613 15 5466076 5468415 Gso7g1644 7 38424534 38426512 PCT