Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0388 ATGGATCCTTCTAATGGACAACCCCAGCAAATGTCTAGCCAGTCAGTGGAGAAGAAGCCAAAGCCTCATCCAGAACAAGCTCTGAAGTGTCCAAGATGTGACTCCACCAGCACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGTAAGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCAGAAAGAAAAGATCATCATCAAAGAGGGCTCAGGATCAAACATTCACACCCAATCTTAACCCACTCACTGCACTCCCTCATTTGTCTTATGACTCCAATGACTTAACTCTAGCATTAGCTAGGTTTCAAAAACAATCAAGTGGGCAATTGGGTTACAATGACCATGATCTTTCAATTATGGGGAACCCCACCACAGGCTCCTTTTGTGACATTCTTGGCAATTCAGGCATGAATCCCTCCTCAGAAAACCCTTCATTTTTGGACGAATTTCAAACTGGGTTCCTTCAGACACAAAACCATCTTCAGAATTTGTATTGTGTGTATGGAAATGGGGACTTGGGGGAGGTGGATAATGGCAATTCTGGTGGGGTTGGGGTTAGTGGAGAGATGATGCTCCCTTATGATCAAGTGGTGATGAGCAATGCAACAGCTCAATCGGTGAGTGTAATGAAGCAAGAAATGTGTAGTGGCAGAGAACAAAGTGAAAGGAGGGTGTTGGGGGGTTTCCCATGGCAGATTAATGCAGACACTAACATTATTGGTGAACTTGATTCAGGAAAAGCAATTGCAAGTTGGAACAGTTTCACAAATTCTTGGCATGGGCTTCTTCAAAGTCCTCTAATGTAG 858 0.4336 MDPSNGQPQQMSSQSVEKKPKPHPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCKRYWTKGGTLRNVPVGGGCRKKRSSSKRAQDQTFTPNLNPLTALPHLSYDSNDLTLALARFQKQSSGQLGYNDHDLSIMGNPTTGSFCDILGNSGMNPSSENPSFLDEFQTGFLQTQNHLQNLYCVYGNGDLGEVDNGNSGGVGVSGEMMLPYDQVVMSNATAQSVSVMKQEMCSGREQSERRVLGGFPWQINADTNIIGELDSGKAIASWNSFTNSWHGLLQSPLM* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0388 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 284 IPR045174 GO:0003700|GO:0006355
Gso15g0388 285 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Gso15g0388 285 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Gso15g0388 285 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Gso15g0388 285 MobiDBLite consensus disorder prediction 1 17 - -
Gso15g0388 285 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 13 284 - -
Gso15g0388 285 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0388 Gso-Chr15 3577859 3579931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0388 26 285 C2C2-Dof Transcription Factor Family AT2G28510 37.367 3.01e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso15g0388 zf-Dof 6.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0388 - - gmx:100795408 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0388 15 3577859 3579931 Gso11g3412 11 50018150 50020089 GST
Gso15g0388 15 3577859 3579931 Gso12g0594 12 5366720 5369857 PCT
Gso15g0388 15 3577859 3579931 Gso11g1248 11 11499694 11501860 PCT
Gso12g0594 12 5366720 5369857 Gso15g0388 15 3577859 3579931 PCT
Gso11g1248 11 11499694 11501860 Gso15g0388 15 3577859 3579931 PCT