Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0345 ATGGTTTTCTCTTCTATTCCAGTCTATTCAGATCCTCCCAATTGGCAGCAGCAACAACAAAATCAACACCAAGCAAATGGAATTAACAGTCCTCAGCTGCTTTCGCCGCTACCTCAGCCGCCACAGGCTCCTCACGTGGGGGTTGAAGCCGGCCAAACCCGGTCCGGTCCGATGGCGGATCGGGCCAAGATTCCGGCCCAGGAAGGAGTTCTGAAGTGTCCTCGGTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAGCCACGGCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCCGAAGGAACAAGAAGCACAAACGGAGTCGCTCAAAATCTCCGGTTTCTACTGACAAACCATCACTTCCTAATTCCACAAGTGCAATCCCTGAGCTTATTGGTCGTTTCCCACAACCCTTCATAGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGGAATACAGGTGTTAACTTGCGTGAGATTCAAGCACAGAACGGTTCTCAAATGGGGTTTCAAATTGGAGGTCATGGCAATGGTACTTCAAGTGTTGCTACTGCAGGAGGAGGAGTGGAGCAGTGGCGGTTCCAGCAGTTTCCTTTCTTGAATGGTTTTGAGTCAACTTTAGCTGTTTCTAATTCCTACCCTTTTCAAAGTGAAAGTGTTGAAGGTTTGGTTGGAGATATTGCCGCAAGTTCCAGGGCTACTCAGCTCCCAGCACGGGTTAAAATGGAATATAACGGTGGCTTGAATTTGTCAAGATCTCCTTTGAGTGTCTCAGAAAATAGTAACCATTACTATTCATGGACGGATTTATCAGGGCTTGTATCTTCTTCAGCGAGTCATCTCTTGTAA 915 0.4765 MVFSSIPVYSDPPNWQQQQQNQHQANGINSPQLLSPLPQPPQAPHVGVEAGQTRSGPMADRAKIPAQEGVLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKHKRSRSKSPVSTDKPSLPNSTSAIPELIGRFPQPFIASLQSMNRYGVGNTGVNLREIQAQNGSQMGFQIGGHGNGTSSVATAGGGVEQWRFQQFPFLNGFESTLAVSNSYPFQSESVEGLVGDIAASSRATQLPARVKMEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLVSSSASHLL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0345 304 MobiDBLite consensus disorder prediction 1 56 - -
Gso15g0345 304 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 300 - -
Gso15g0345 304 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Gso15g0345 304 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Gso15g0345 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 300 IPR045174 GO:0003700|GO:0006355
Gso15g0345 304 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Gso15g0345 304 MobiDBLite consensus disorder prediction 115 148 - -
Gso15g0345 304 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0345 Gso-Chr15 3123093 3124871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0345 19 289 C2C2-Dof Transcription Factor Family AT3G55370 39.869 4.06e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso15g0345 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0345 - - gmx:100775899 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0345 15 3123093 3124871 Gso11g3464 11 50540342 50542117 GST
Gso15g0345 15 3123093 3124871 Gso12g0527 12 4715553 4717239 PCT
Gso15g0345 15 3123093 3124871 Gso11g1189 11 10700591 10702337 PCT
Gso12g0527 12 4715553 4717239 Gso15g0345 15 3123093 3124871 PCT
Gso11g1189 11 10700591 10702337 Gso15g0345 15 3123093 3124871 PCT