Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0202 ATGCAGGATCCAACGTTGTTCCAACCCATGAAACCCCACTTTCCGGAACAGGAGCAGCTTAAATGCCCGCGCTGTGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACCAAAGGTGGTGCCTTGAGAAACATCCCTGTTGGTGGTGGAAGCAGAAAGAACACAAAGCGATCATCTTCATCCAACAACAACACCAAACGCGCTTCCCCATCACCCCCAGTTTCCTCTGCACCCGCTCCAGAACCCGACCCTACCCGGATTGGCCCCACCCCGGTTGTTGGTGGCGGGAGTTTCAGTTCCCTTTTGGCATCAAGTGGCCATTTGGGCCTGGGGAACCTCTTGGAGGGTCTGAATTCAAGTGGGTCTAATCTGAAAACTGTGCAAATGGAAGAGTTTGGGGAGAATGTTAGTTCGGGTCCGGTTGCGGATCCGGGTTCGGGTCGGAATCCCGGGTTGGAGATGCAAAGCAATGGGAACGCAGAGAATTTTCTGAGTTTGCAAAATGGTGATTCAAGCTGTTGGAATGGTACTAGTGGTTGGTCTCACCTTGCTATTTTCACTCCTGGGTCAAGCTTTCAGTAA 636 0.5142 MQDPTLFQPMKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSSSNNNTKRASPSPPVSSAPAPEPDPTRIGPTPVVGGGSFSSLLASSGHLGLGNLLEGLNSSGSNLKTVQMEEFGENVSSGPVADPGSGRNPGLEMQSNGNAENFLSLQNGDSSCWNGTSGWSHLAIFTPGSSFQ* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0202 211 MobiDBLite consensus disorder prediction 91 105 - -
Gso15g0202 211 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 211 IPR045174 GO:0003700|GO:0006355
Gso15g0202 211 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Gso15g0202 211 MobiDBLite consensus disorder prediction 61 111 - -
Gso15g0202 211 MobiDBLite consensus disorder prediction 151 175 - -
Gso15g0202 211 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Gso15g0202 211 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Gso15g0202 211 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 211 - -
Gso15g0202 211 MobiDBLite consensus disorder prediction 69 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0202 Gso-Chr15 1788804 1790423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0202 11 127 C2C2-Dof Transcription Factor Family AT1G51700 61.364 1.40e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso15g0202 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0202 - - gmx:100798927 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0202 15 1788804 1790423 Gso11g3610 11 51793846 51795434 GST
Gso15g0202 15 1788804 1790423 Gso7g0104 7 944830 946674 PCT
Gso15g0202 15 1788804 1790423 Gso8g1618 8 15836420 15837897 PCT
Gso7g0104 7 944830 946674 Gso15g0202 15 1788804 1790423 PCT
Gso8g1618 8 15836420 15837897 Gso15g0202 15 1788804 1790423 PCT