Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1839 ATGGGAGTTCCAGCGTTCTACCGATGGCTGGCGGAGAAGTATCCGATGGTGATTGTGGACGCGATCGAAGAGGAACCGGTCGTAATCGACGGCGTTCAAATCCCCGTCGATACGAGCAAGAAGAACCCTAACAACATCGAATACGATAACCTCTATCTCGACATGAACGGCATCATTCATCCTTGCTTCCACCCCGAGGATAGGCCGTCTCCGACGTCGTTCGATGAGGTGTTTGAGTGCATGTTCGACTACATTGACAGGCTATTCATTATGGTGCGGCCGCGGGAGCTGCTCTATATGGCTATTGACGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCAGCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGAAGAAAACTTCCTTCTAAAGGAGAGTCACAGACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTATCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACACGACATTGCCTATATGGTTTGGATGCTGATCTGATTATGTTGGCATTGGCTACCCATGAAATTCATTTTTCAATTCTTAGAGAGATTGTATTTACTCCTGGACAAGACAAGTGCTTCCTCTGTGGTCAGATGGGTCATATGGCTGCAAACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGACGAAAAAGCCCTTCCAGTTCCTAAATATTTGGACTCTGAGAGAATATCTGGAGTATGAGATGAGAATATCTAATCCTCCTTCCGAGATTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGTTTTTTTGTCGGCAATGATTTTCTACCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATTAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTTGGTGGTTATTTAACCAATGGAAGCACGATAAACTTGAGCAGGGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACAGAAAGAATAAAGCGTGAAAAGGCACAGGCAAGAAGGGGAGATGATGCTGAGCCTCAATTTCAACCAGAGTCTTTAGTCGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAACTCCTCCACCATTTCAACCTTCTGGGCATTATAATTCTCAAGCGTCTGCATCAGTTAGAAAAGACAATAAAGAAGCATTTGAGAGGCCTCTTAAAGTTTCTAGGGTTTCTTCTGGAGCAACTGTTGCCGCTGCTATTGTTGAAGCTGAGAATAATCTTGAAATAGATGCTCAAGATAATAAAGACGAATTGAAAACAAAATTAAAGGAGATACTTCGAGAGAAATCTGATGTATTTAACTCAAAAAATGCTGAAGAGGATAAGATTAAGTTGGGAGAACCTGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCCAAAACTCCTGAGGAACTTGAAGCTATACGTAAAGATGTTGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTATTATGAAGGCGTTTGTTCTTGGAATTGGTTTTATCCTTATCACTATGCCCCTTTTGCGTCTGATCTCAAAGGCCTTGGTGAACTTGATATTAGCTTTAAGCTGGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCATATAGGAGACTTATGACAGATCCAAACTCACCAATCATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGCAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTGCCATTTATTGATGAAGTGCGTCTTCTTGCAGAAGTTCAAAAGATTGAAAACTTGTTAACACCAGACGAAAAGCGACGGAATGCTATAATGTTCGACTTGATCTTTGTGAATTCTTGTCATCCTCTCTCTGCATGCATAAGTACACTTGACAACAAGTGTAAAAACATGCCAAATAGTGAACGGGCTGTGGTCAAGGAAAAAATCAACCCCAAAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCTCCTATTTTTAGGTCTCCTATTGCAAGCATGGAAGATATCATGGACAATCATGTTATATGTGCAATATATAGACTCCCAGATGCACATAAACATATTACCCGACCACCACAAGGAGTTAAATTTCCAAAAAAGATTGTTGAAATTGGGGATCTAAAACCTGAACCTGTTTTGTGGCATGAAGATTCAGGCAGGAGACACCATTCTGAAAATGGGAGGAAAAACCCTCCAGGATCTATTTCTGGTCGGGAGCTTGGGGATGCAGCACACAGACTCATTGTCAATTCCTTACAGGCAAAGGTTGATACTAATGGATACCGCGATCCGCATAATGGACCTCCTATATCTTATCCTGCACCCATGGGTCATTATCGACAACCAGTGCCTTCATATGGTTATGAATCCAGCCCAGGATATGTTGCAATGCCGCCACCTATTTCAGCTCCCTCACTCCAAGGCAGACCACAGTTTGCACCTTACAATGCTGCCCCTACTGCTCCGCAGTATGGTTGCAATCAACCATACCCGCCACCACCAGTGGTGTACAATCATCCTCGTCAGCAATCAAATTCTTACGAAAGAAATGACTATCAGCATGCCAGATCAAATCATTATGAAAGAAATCACCATCAAGGTAGTGGGGGTAGTTCAAGGCATGGATATCAATCATCAGGAAATAATCACAATGCCAGGTTTAATAATTCACATGGTTCATATGGTAGTCACCATCATGAAGTTAGTCACCACAACCAAAACTTCCAACCTTCTAGAGCTCATCAGAATTGGACTCCACCAAACAACCCGAGTGGGCACAGGGATTATGGTCATCATTCATCCAATCAATATTCTTTATTAGATAGAAGAGGAAACAGGAATCCAATGCCCCCACCTGGTTACAGTCGCAAATAA 3240 0.425 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIDGVQIPVDTSKKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFIMVRPRELLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPSKGESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREIVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGEAIVTKKPFQFLNIWTLREYLEYEMRISNPPSEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFREFGGYLTNGSTINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDAEPQFQPESLVAVSRFHGSRLASAPTPPPFQPSGHYNSQASASVRKDNKEAFERPLKVSRVSSGATVAAAIVEAENNLEIDAQDNKDELKTKLKEILREKSDVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKGLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIENLLTPDEKRRNAIMFDLIFVNSCHPLSACISTLDNKCKNMPNSERAVVKEKINPKERDTCSGGMNGYISLCGGEPCPPIFRSPIASMEDIMDNHVICAIYRLPDAHKHITRPPQGVKFPKKIVEIGDLKPEPVLWHEDSGRRHHSENGRKNPPGSISGRELGDAAHRLIVNSLQAKVDTNGYRDPHNGPPISYPAPMGHYRQPVPSYGYESSPGYVAMPPPISAPSLQGRPQFAPYNAAPTAPQYGCNQPYPPPPVVYNHPRQQSNSYERNDYQHARSNHYERNHHQGSGGSSRHGYQSSGNNHNARFNNSHGSYGSHHHEVSHHNQNFQPSRAHQNWTPPNNPSGHRDYGHHSSNQYSLLDRRGNRNPMPPPGYSRK* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1839 1079 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Gso14g1839 1079 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Gso14g1839 1079 PIRSF Exonuclease_Xrn2 1 1069 IPR017151 GO:0004534|GO:0005634|GO:0006139
Gso14g1839 1079 Coils Coil 122 142 - -
Gso14g1839 1079 Coils Coil 508 528 - -
Gso14g1839 1079 MobiDBLite consensus disorder prediction 837 861 - -
Gso14g1839 1079 Pfam Xrn1 helical domain 325 828 IPR041412 -
Gso14g1839 1079 MobiDBLite consensus disorder prediction 974 990 - -
Gso14g1839 1079 CDD PIN_XRN1-2-like 51 312 - -
Gso14g1839 1079 MobiDBLite consensus disorder prediction 927 1079 - -
Gso14g1839 1079 Gene3D - 617 714 - -
Gso14g1839 1079 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Gso14g1839 1079 MobiDBLite consensus disorder prediction 449 473 - -
Gso14g1839 1079 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Gso14g1839 1079 MobiDBLite consensus disorder prediction 991 1017 - -
Gso14g1839 1079 MobiDBLite consensus disorder prediction 1028 1064 - -
Gso14g1839 1079 PANTHER 5'->3' EXORIBONUCLEASE 1 981 IPR027073 -
Gso14g1839 1079 Gene3D - 144 385 - -
Gso14g1839 1079 Gene3D - 1 143 - -
Gso14g1839 1079 MobiDBLite consensus disorder prediction 413 432 - -
Gso14g1839 1079 PANTHER 5'-3' EXORIBONUCLEASE 1 981 - -
Gso14g1839 1079 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Gso14g1839 1079 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1839 Gso-Chr14 50825487 50837735 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1839 14 50825487 50837735 Gso17g2177 17 41468602 41479355 GST