Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1836 ATGATGGCTTCCGTGGAAGAAAAGATTAAAACTGGAGGAGGAATGATTGTTGGTGGTCAAACTCTTGCTGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCATTACCCCAGGTTGGGAGCCTTGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACATCACAGATTCCAAACTACCCCAATCTTCCATATCAGTTGCTGTGTCAAGTTCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTTTGCAACCACTGAATTCTGAAAGAGAAGTCTTTCCCATATCCGACTTTGGGCACAAGCACAGTAAACATCCCAGTGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACGAGCACGCACGGTGGCTTTTCGGTTCCACGCAGAGCTGCAGAGAAACTCTTTCCTCCATTGGACTACACAATTCAACCCCCGACTCAAGAGCTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATATACAGAGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAGATCACAATTGCGAGTTGGCGTTAGGCGTGTCAATCGTCAGCAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCAAATCGAAGTCCATTCACTATTTTCTACAATCCAAGAGCATGCCCCTCAGAATTTGTTATTCCTCTGGCCAAATACAGAAAATCTGTATTTGGGACTCAGGTCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACAGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTAAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAACAGAGTTAGTGTGTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTAAAACGGCCATTACCATCTGGTCTTTTGGAAAATGAGTGGGGAACTTTGTTAAGAAGACCCTTTATAAGAGTTCCAGAAAATGGAACCATGGAGCTCTCAAACTCAATTCCAAATCTCTACTCAGAACACATGATGAGAATGCTTTTGAAACCCCAGCTGATTAACAATAATGGAGCTTTTTTATCTGCCATGCAACAAGAATCTGCTGCTACAAGAGGCCCCTTGCAAGAGATGAAGACCACACTTGCAGCAGAAAACCAAATGCCACTTAAAAATCTACATCCTCATTCTATCCCTGACCAACCTAATGCCTTAAACATGCAATCACTGTTGAAAAACGACCAACCTGAAAAATTGCACCCTCTTGGCAAAATTGATAATCATCTGTCTTCTGGGATAGTTATTGACAAGCCAAAATCAGAATCTGAGGTATTACCTGATCATGTGATTGACTACCCTTCCATGGAAGGGTGCAACATCGAAAAGGTGGCAGCAAATCCTGTTAACCAGCAAGGTCTAGCAAACCAATTGCCATTCCATAATCAAAACCAGAGTCCACTACTCCCTCAATCTAGTCCATGGCCTATGCCACCTCAGATAGAATCGTCCATGCCCCATCCTCAAATGATTGATATGGTTCAAGCTGATTCTGCTATGGTAAATGGCCTGTTTCCTCAGCTTGACATCAATGAATGGATGTCATATGCTTCTTCCCAACCTTTTGCTGGGCAGAACAGACCAACTGGACCTTTGTCTGACTTGCAAGAACATACCTCACTTCAGCCTCAAGTAGTGAATCCCCCTTTACCTTCAATGAACAATGAAGTGTGGGATCATTATGTCAAGAACTTGAAGTTCTTATCTCAAGCAGACCAGCTAACATCCATTTGTCAGCCGGGGCTGTATGGCCTCAATGGCATACCAAGCTCAAACAATTTGAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGCTAGCAACAGCGTAGGCACCACTGTGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGAATTTCAAAATCCTCAAGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACTTCAGCAAGTCTAACTGAATCACATGCCTTTCCTCTTAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTCCTGCAGAATAACTCGTGGCAGCAAGTACCTGCGCCCATCCGAACTTACACAAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTACGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACTAAATGTTCAGGATGGAAATTGGTCTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGTGATGATCCTTGGGAAGAATTTGTGGGCTGTGTCCGCTGCATAAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGGGCTTTGCAAGGGATGAATGTTTGA 2793 0.4375 MMASVEEKIKTGGGMIVGGQTLAAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPYQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEREVFPISDFGHKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDERSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSGLKRPLPSGLLENEWGTLLRRPFIRVPENGTMELSNSIPNLYSEHMMRMLLKPQLINNNGAFLSAMQQESAATRGPLQEMKTTLAAENQMPLKNLHPHSIPDQPNALNMQSLLKNDQPEKLHPLGKIDNHLSSGIVIDKPKSESEVLPDHVIDYPSMEGCNIEKVAANPVNQQGLANQLPFHNQNQSPLLPQSSPWPMPPQIESSMPHPQMIDMVQADSAMVNGLFPQLDINEWMSYASSQPFAGQNRPTGPLSDLQEHTSLQPQVVNPPLPSMNNEVWDHYVKNLKFLSQADQLTSICQPGLYGLNGIPSSNNLRDLSAESNNQSEICVNVDASNSVGTTVVDPSTSSTILDEFCTMKDREFQNPQDCMVGNLSSSQDVQSQITSASLTESHAFPLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKCSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1836 930 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Gso14g1836 930 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 928 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso14g1836 930 ProSiteProfiles PB1 domain profile. 824 908 IPR000270 GO:0005515
Gso14g1836 930 Gene3D - 146 249 IPR015300 -
Gso14g1836 930 SUPERFAMILY DNA-binding pseudobarrel domain 137 277 IPR015300 -
Gso14g1836 930 SMART B3_2 148 250 IPR003340 GO:0003677
Gso14g1836 930 CDD B3_DNA 147 248 IPR003340 GO:0003677
Gso14g1836 930 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Gso14g1836 930 Gene3D - 312 384 - -
Gso14g1836 930 Pfam AUX/IAA family 821 911 IPR033389 -
Gso14g1836 930 Gene3D - 821 913 - -
Gso14g1836 930 SUPERFAMILY CAD & PB1 domains 826 903 - -
Gso14g1836 930 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso14g1836 930 PANTHER AUXIN RESPONSE FACTOR 5 29 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1836 Gso-Chr14 50757471 50764596 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso14g1836 AUX_IAA 2.3e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1836 14 50757471 50764596 Gso17g2174 17 41387759 41393545 GST