Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0757 ATGGCTTTGGAAGCTCTCAACTCACCAACAACAACCGCCCCATCTTTCCCCTTCGACGACCCAACTATTCCATGGGCCAAAAGAAAACGTTCAAAGCGTTGTTCACGCGACCACCCTTCGGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCCGCCGCGTCAGCACTCCACCGCCGCAACCGACTCCAGATCCTTCCACCAAGCTCAGTTACAAATGCTCCGTTTGCAACAAAAGCTTCCCCTCTTACCAAGCGCTCGGTGGACACAAGGCCAGTCACCGGAAACTCGCTGCCTCCGGCGGCGAAGACCAACCCACCACCACCTCCTCCGCCGCCAGCTCCGCCAACACCGCCTCCGGAGGTAGGACCCACGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCCCTCGGCGGACACAAACGTTGTCACTACGAAGGTAACAGTAATGGAAATAACAACAACAGTAACAGCTCTGTCACCGCCGCCTCGGAAGGCGTGGGGTCCACCCACACCGTGAGTCACGGCCACCACCGAGACTTCGATCTCAACATCCCGGCTTTTCCGGATTTTTCGACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTCATGAAGAAGCCTCGCCCCTTCGTCATTCCCAAGATCGAAATCCCTCAATATCAATGA 702 0.5783 MALEALNSPTTTAPSFPFDDPTIPWAKRKRSKRCSRDHPSEEEYLALCLIMLARGGTTRRVSTPPPQPTPDPSTKLSYKCSVCNKSFPSYQALGGHKASHRKLAASGGEDQPTTTSSAASSANTASGGRTHECSICHKSFPTGQALGGHKRCHYEGNSNGNNNNSNSSVTAASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKVGEDEVESPHPVMKKPRPFVIPKIEIPQYQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0757 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Gso14g0757 233 MobiDBLite consensus disorder prediction 98 130 - -
Gso14g0757 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
Gso14g0757 233 SUPERFAMILY beta-beta-alpha zinc fingers 78 153 IPR036236 -
Gso14g0757 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Gso14g0757 233 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Gso14g0757 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Gso14g0757 233 MobiDBLite consensus disorder prediction 108 130 - -
Gso14g0757 233 Gene3D Classic Zinc Finger 109 184 - -
Gso14g0757 233 MobiDBLite consensus disorder prediction 1 36 - -
Gso14g0757 233 MobiDBLite consensus disorder prediction 157 180 - -
Gso14g0757 233 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Gso14g0757 233 MobiDBLite consensus disorder prediction 157 190 - -
Gso14g0757 233 Pfam C2H2-type zinc finger 131 154 - -
Gso14g0757 233 Pfam C2H2-type zinc finger 78 102 - -
Gso14g0757 233 MobiDBLite consensus disorder prediction 1 17 - -
Gso14g0757 233 SMART c2h2final6 78 100 IPR013087 -
Gso14g0757 233 SMART c2h2final6 131 153 IPR013087 -
Gso14g0757 233 Gene3D Classic Zinc Finger 77 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0757 Gso-Chr14 7920795 7921815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0757 1 220 C2H2 Transcription Factor Family AT1G27730 54.506 1.01e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso14g0757 zf-C2H2_6 1.6e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0757 14 7920795 7921815 Gso17g2010 17 39463712 39464829 GST
Gso14g0757 14 7920795 7921815 Gso4g0390 4 3560776 3561821 PCT
Gso14g0757 14 7920795 7921815 Gso6g0367 6 3449171 3450306 PCT
Gso4g0390 4 3560776 3561821 Gso14g0757 14 7920795 7921815 PCT
Gso6g0367 6 3449171 3450306 Gso14g0757 14 7920795 7921815 PCT