Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0743 ATGGTATCATCATCGGGAAAAAGCAGAGAAATGGATAGGGTGAAGGGTCCATGGAGCCCAGAAGAGGACGAGGCCCTGCGGGCGCTGGTTCAGGCCCACGGGCCTCGAAACTGGTCGGTGATAAGCAAGTCCATTCCGGGGAGATCCGGGAAATCGTGCCGCTTACGGTGGTGCAACCAGCTCTCGCCGCAGGTGGCCCATCGCCCCTTCTCGCAGGAGGAGGACGAGGCCATCATCATGGCCCACGCCAAGTTCGGCAACAAGTGGGCCACCATAGCTCGCCTGCTCAACGGCCGCACCGATAACGCCGTCAAAAACCACTGGAATTCCACTCTCAAGAGAAAATCCTCCGCCGTTAGTGACGACGACGTCGTCACGCATCGTCAGCCTCTTAAAAGATCCAACAGCGTCGGCCCGGCCCACTTGAACCCTGCCAGCCCATCAGTCTCCGATTTGAGCGATCCGGGCCTTCCCGCTCTGTCAAACCCCTCACCTTCGGCCCATTACATGCCCAATCTCATGGAAACTGCTTCTTCCGCTCCCGATCCAGCCACGTCACTTAGTTTGTCTCTCCCTGGGTTCACTGTACCTCAACCAGTGTCTCCGCCGCCGCCGCCACTGCCACTGCCGGCGGAGACGGTGGAGGAGCGAGGGAAGCAAATGTTCAACGCGGAGTTCTTGAGAGTGATGCAAGAGATGATAAAAAAGGAAGTGAGGAGTTACATGTCAGGGATGGAAGAACAGAAGAATGGGTTCAGAATGCAAACCGAAGCGATTGGGAACGCGGTGGTGAAGCGCATGGGAATTAGCAACATCGAGTGA 822 0.5718 MVSSSGKSREMDRVKGPWSPEEDEALRALVQAHGPRNWSVISKSIPGRSGKSCRLRWCNQLSPQVAHRPFSQEEDEAIIMAHAKFGNKWATIARLLNGRTDNAVKNHWNSTLKRKSSAVSDDDVVTHRQPLKRSNSVGPAHLNPASPSVSDLSDPGLPALSNPSPSAHYMPNLMETASSAPDPATSLSLSLPGFTVPQPVSPPPPPLPLPAETVEERGKQMFNAEFLRVMQEMIKKEVRSYMSGMEEQKNGFRMQTEAIGNAVVKRMGISNIE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0743 273 Gene3D - 68 136 - -
Gso14g0743 273 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso14g0743 273 CDD SANT 69 112 IPR001005 -
Gso14g0743 273 MobiDBLite consensus disorder prediction 1 20 - -
Gso14g0743 273 Gene3D - 14 66 - -
Gso14g0743 273 PANTHER MYB PROTEIN-RELATED 11 242 - -
Gso14g0743 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso14g0743 273 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Gso14g0743 273 MobiDBLite consensus disorder prediction 139 185 - -
Gso14g0743 273 SMART sant 66 114 IPR001005 -
Gso14g0743 273 SMART sant 14 63 IPR001005 -
Gso14g0743 273 CDD SANT 17 59 IPR001005 -
Gso14g0743 273 Pfam Myb-like DNA-binding domain 18 76 - -
Gso14g0743 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Gso14g0743 273 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 11 242 - -
Gso14g0743 273 MobiDBLite consensus disorder prediction 114 185 - -
Gso14g0743 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0743 Gso-Chr14 7739874 7741197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0743 9 246 MYB Transcription Factor Family AT4G37260 49.822 1.55e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso14g0743 Myb_DNA-bind_6 7.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0743 14 7739874 7741197 Gso17g2023 17 39680996 39682326 GST
Gso14g0743 14 7739874 7741197 Gso4g0369 4 3376869 3378169 PCT
Gso4g0369 4 3376869 3378169 Gso14g0743 14 7739874 7741197 PCT