Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0723 ATGGCGCAGATTCAGGTGCAGCATCAGAGTCCGGTGTCGGCTCCTCCTCCGAACGGCGTGGCTAACGCGCCGAACAACCCGAACCAGTTCGTTACGACGTCGTTGTACGTCGGCGATCTTGAGCAGAATGTCAACGACGCACAGCTATACGATCTGTTCAACCAGGTCGTCCAAGTCGTTTCGGTGCGCGTTTGCAGGGACCTTACGACGCGTCGTTCACTCGGTTATGGCTATGTTAATTTCAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCACTCAACAACAGACCTATTAGGATCATGTATTCTCATCGGGATCCTAGTCTTAGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACTCATTCTTTCTTGCAAAATAGCAACTGATGCTTCTGGCCTGTCTAAGGGCTATGGTTTTGTTCAATTCGACAGTGAAGAGTCTGCACAGAATGCTATTGACAAGTTAAATGGCATGTTGATCAATGATAAGCAGGTCTATGTAGGCCATTTTCTGCGAAAGCAAGATAGAGAGAATGCTCTCAGTAAGACAAAATTTAATAATGTCTATGTGAAAAACTTATCAGAGTCAACCACGGATGAAGAGTTGATGAAATTTTTTGGAGAATATGGTACCATTACTAGTGCTGTAATAATGAGGGACGCAGACGGTAAATCAAGGTGTTTTGGCTTTGTCAATTTTGAAAACCCAGATGATGCTGCCAAAGCTGTTGAAGGACTTAATGGGAAGAAAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACAAGAACTGAAAGGACGGTTTGAGCAGAGTATAAAGGAATCTGCTGACAAATATCAAGGTGTGAACCTGTATCTCAAGAACTTGGATGATACTATCAGTGATGAAAAACTTAAGGAAATGTTTGCTGAATATGGTACAATAACTTCATGCAAGGTTATGCGAGACCCCACTGGAATCGGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGTGCTCTCGGTGAGATGAATGGTAAAATGATTGCTGGAAAACCTCTGTACGTTGCCCTTGCACAGAGAAAAGAAGACAGAAGAGCAAGGTTACAGGCTCAGTTTTCACAGATGAGGCCTGTTGCAATAACGCCTTCTGTTGCGCCCCGTATGCCTCTCTACCCTCCTGGTGCTCCTGGTCTTGGACAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGATACCAGCAGCAACTAGTTCCTGGAATGAGACCTGGTGGTGGTCCCATGCCAAGCTTCTTTGTTCCTATGGTTCAGCAAGGCCAACAAGGGCAGCGCCCAGGGGGCCGCCGAGGAACAGGTCCTGTGCAACAACCCCAACAGCCAATGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGGCGTGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCACTTCAAGGTGTAGCTGGTGGAATGATGTCAGTCCCTTATGACATGGGTGGTCTGCCAATCCGCGATGCTGTGGGACAGCCAATGCCCATTCAAGCTTTGGCCACGGCTCTTGCAAATGCTCCCCCTGAACAGCAGAGGACTATGCTCGGTGAAGCTTTATACCCGCTTGTGGATCAGCTGGAACACGATGCTGCAGCAAAGGTTACTGGCATGCTTCTGGAGATGGACCAGCCTGAAGTTTTACATCTGATTGAGTCACCAGATGCTCTGAAGGCAAAAGTTGCTGAAGCCATGGATGTGTTAAGAAATGTTGCTCAACAGCAAACTAACCCAGCTGATCAACTAGCTTCACTCTCTCTCAATGACAATCTTGTGTCTTAG 1959 0.4686 MAQIQVQHQSPVSAPPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQRPGGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYDMGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0723 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Gso14g0723 652 CDD RRM1_I_PABPs 34 113 - -
Gso14g0723 652 CDD RRM3_I_PABPs 211 290 - -
Gso14g0723 652 MobiDBLite consensus disorder prediction 1 26 - -
Gso14g0723 652 Gene3D - 202 299 IPR012677 -
Gso14g0723 652 Gene3D - 1 114 IPR012677 -
Gso14g0723 652 Gene3D - 300 405 IPR012677 -
Gso14g0723 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723
Gso14g0723 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Gso14g0723 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Gso14g0723 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Gso14g0723 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Gso14g0723 652 MobiDBLite consensus disorder prediction 477 502 - -
Gso14g0723 652 Gene3D - 115 201 IPR012677 -
Gso14g0723 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 628 IPR006515 GO:0003723
Gso14g0723 652 MobiDBLite consensus disorder prediction 1 16 - -
Gso14g0723 652 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676
Gso14g0723 652 Pfam Poly-adenylate binding protein, unique domain 563 627 IPR002004 GO:0003723
Gso14g0723 652 SUPERFAMILY RNA-binding domain, RBD 212 395 IPR035979 GO:0003676
Gso14g0723 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Gso14g0723 652 SUPERFAMILY PABC (PABP) domain 497 643 IPR036053 GO:0003723
Gso14g0723 652 SMART rrm2_1 316 388 IPR003954 GO:0003676
Gso14g0723 652 SMART rrm2_1 213 285 IPR003954 GO:0003676
Gso14g0723 652 SMART rrm2_1 122 194 IPR003954 GO:0003676
Gso14g0723 652 SMART rrm2_1 34 107 IPR003954 GO:0003676
Gso14g0723 652 SMART rrm1_1 122 194 IPR000504 GO:0003723
Gso14g0723 652 SMART rrm1_1 34 107 IPR000504 GO:0003723
Gso14g0723 652 SMART rrm1_1 213 285 IPR000504 GO:0003723
Gso14g0723 652 SMART rrm1_1 316 388 IPR000504 GO:0003723
Gso14g0723 652 Gene3D - 551 634 - -
Gso14g0723 652 PANTHER RNA BINDING PROTEIN 22 637 - -
Gso14g0723 652 SMART poly_2 567 630 IPR002004 GO:0003723
Gso14g0723 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Gso14g0723 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Gso14g0723 652 CDD RRM4_I_PABPs 314 392 - -
Gso14g0723 652 CDD RRM2_I_PABPs 119 195 IPR045305 -
Gso14g0723 652 PANTHER POLYADENYLATE-BINDING PROTEIN 22 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0723 Gso-Chr14 7404977 7410079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0723 1 647 Eukaryotic Initiation Factors Gene Family AT4G34110 67.176 0.0 857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0723 14 7404977 7410079 Gso17g2043 17 39956507 39961677 GST