Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0718 ATGGCTCTTCTACTAGACAACTGTGAAAGCATTTTGCTGTCTTTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTAGACGACCCTTCCACCGACCACATAGTCTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGAGACCCCCCGAGTTCGCTAGGGACCTTCTCCCCAACTATTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGAAAGATTGTGCCTGATAGATGGGAGTTCGCGAATGAGTTCTTCAAGAAAGGAGAGAAGAACTTGTTGTGCGAGATTCACAGAAGAAAAACCCATCACCAGCATCATCAACAAGTACAAGCCATGAACAACCATCACCACCATCATAAGTTTGGACTCAACGTTTCCTCTATCTTTCCCTTCCACAATAACAGACTCAGTGTTTCCCCTTCTCATGATTCGGACGAGGTAATAATACCCAATTGGTGTGACTCGCCCCCAAGAGGAGTTGCCGGTGTAAACAACAACAACAGCAGCAGCAACAACTACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGACTTAGGAGAAGCAACAACATGCTCATGTCGGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTCGTTCAGAACCATGTCAAGCCCGTGGCTCCTAGCAACAACAACAATTTCCCTTCTTTTCTACTCTGCAGTGATAATAGTAATATCAACAACAACACATCACCACAAACACAAACACAAGCACAAGCCTCTCCTATGAGTAACGTTTCAACGGTGCAAAGGCAACTGAAGCAGTTTGTAGGGTGCTATTCCAACAACACAAAGCAAGCGCGTGCTGTGAACTCTCCCACTAACAGTTCCATAACCATTGTTGAGGAAGAGGCTAGCAGTAACAGTTGCAAGACCAAGCTTTTTGGGGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCTGAGTACGGGTCTAACAATGTTCTTCAAAGCTCCGAAACGAATAAGGCGCGTTTGGCTTTGGAAAATGATGAACTATTAGGCTTGAATCTTATGCCCCCTTCAACTTGTTAA 1113 0.4528 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKNLLCEIHRRKTHHQHHQQVQAMNNHHHHHKFGLNVSSIFPFHNNRLSVSPSHDSDEVIIPNWCDSPPRGVAGVNNNNSSSNNYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNNNFPSFLLCSDNSNINNNTSPQTQTQAQASPMSNVSTVQRQLKQFVGCYSNNTKQARAVNSPTNSSITIVEEEASSNSCKTKLFGVSLQSKKRVHPEYGSNNVLQSSETNKARLALENDELLGLNLMPPSTC* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0718 370 Gene3D - 17 117 IPR036388 -
Gso14g0718 370 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso14g0718 370 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso14g0718 370 PANTHER BNAC06G00310D PROTEIN 276 369 - -
Gso14g0718 370 PANTHER BNAC06G00310D PROTEIN 12 238 - -
Gso14g0718 370 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso14g0718 370 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso14g0718 370 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso14g0718 370 Coils Coil 191 211 - -
Gso14g0718 370 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso14g0718 370 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gso14g0718 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 276 369 IPR027725 -
Gso14g0718 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 238 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0718 Gso-Chr14 7312610 7314539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0718 1 369 HSF AT1G46264 53.333 3.44e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso14g0718 HSF_DNA-bind 5.1e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0718 14 7312610 7314539 Gso17g2049 17 40048502 40050416 GST
Gso14g0718 14 7312610 7314539 Gso4g0349 4 3132554 3134203 PCT
Gso14g0718 14 7312610 7314539 Gso6g0332 6 3078273 3079887 PCT
Gso4g0349 4 3132554 3134203 Gso14g0718 14 7312610 7314539 PCT
Gso6g0332 6 3078273 3079887 Gso14g0718 14 7312610 7314539 PCT