Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0690 ATGCAGCAATCAAACGGCTCTGATTCGTCCACGACGGAGCAGAAAGCGCCGCCGCCGAGGCAATCACCGGCGGTGGCGAGGCCGCAGCAATGGCTGCCGATGCAGTACCCTGCGGCGGCGATGGTAATGCCGCACCACATGTTGCCGCCTCAGCATTACGCGCCGCCGCCCTACGTGCCCTTCCACCACCACCACCACCATCACCAGTACGCGGCGCCGCACGTGCCGAACCAACATCAGCAGCAGCAGCAGCATCACCACCATCAGAACGGATCCGGCGGCGAGAACAAAACCATCTGGATCGGCGATTTGCATCACTGGATGGACGAAAACTATCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCTTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTTTGCAAAATTATGCTGGAATTTTGATGCCCAATACTGAGCAACCATTCCGTCTGAACTGGGCAACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGACAATCAGAGAACCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAGGTGGGCAGTCAAATGGCACAGCCAACCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTCAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTCCAATTCGCAAACAGAAATAATGCTGAAGAGGCCTTGCAGAAGCTAAACGGGACATCGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACTGGGGCATATTATGGGGCCCCTATGTATGATGGCTATGGGTACGCATTGACCCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGGGCTTACCCCCTTTATGGAGGCCACCAACAACAAGTAAGCTGA 1278 0.4945 MQQSNGSDSSTTEQKAPPPRQSPAVARPQQWLPMQYPAAAMVMPHHMLPPQHYAPPPYVPFHHHHHHHQYAAPHVPNQHQQQQQHHHHQNGSGGENKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNQRTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTANQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPMYDGYGYALTPRHDPSIYAAAYGAYPLYGGHQQQVS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0690 425 MobiDBLite consensus disorder prediction 270 299 - -
Gso14g0690 425 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 24 424 - -
Gso14g0690 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Gso14g0690 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Gso14g0690 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Gso14g0690 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Gso14g0690 425 Gene3D - 60 186 IPR012677 -
Gso14g0690 425 MobiDBLite consensus disorder prediction 74 96 - -
Gso14g0690 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Gso14g0690 425 SUPERFAMILY RNA-binding domain, RBD 283 395 IPR035979 GO:0003676
Gso14g0690 425 MobiDBLite consensus disorder prediction 1 18 - -
Gso14g0690 425 Gene3D - 272 373 IPR012677 -
Gso14g0690 425 MobiDBLite consensus disorder prediction 57 97 - -
Gso14g0690 425 CDD RRM2_SECp43_like 189 268 - -
Gso14g0690 425 CDD RRM1_SECp43_like 98 178 - -
Gso14g0690 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Gso14g0690 425 Gene3D - 189 265 IPR012677 -
Gso14g0690 425 MobiDBLite consensus disorder prediction 265 299 - -
Gso14g0690 425 SUPERFAMILY RNA-binding domain, RBD 65 178 IPR035979 GO:0003676
Gso14g0690 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Gso14g0690 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Gso14g0690 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Gso14g0690 425 SUPERFAMILY RNA-binding domain, RBD 174 283 IPR035979 GO:0003676
Gso14g0690 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Gso14g0690 425 MobiDBLite consensus disorder prediction 1 29 - -
Gso14g0690 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0690 Gso-Chr14 6969226 6973328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0690 99 375 Eukaryotic Initiation Factors Gene Family AT4G34110 29.930 3.83e-30 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0690 14 6969226 6973328 Gso17g2074 17 40371694 40375829 GST
Gso14g0690 14 6969226 6973328 Gso4g0324 4 2936234 2942412 PCT
Gso14g0690 14 6969226 6973328 Gso6g0308 6 2873844 2880972 PCT
Gso4g0324 4 2936234 2942412 Gso14g0690 14 6969226 6973328 PCT
Gso6g0308 6 2873844 2880972 Gso14g0690 14 6969226 6973328 PCT