LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso14g0685	ATGTCTCTTTCTCGCAAACCACTTTCTCCGTCGCCCTCGACCCCAGCCAAGCAAATCGACGCCGGTGATTTAGCTCCGGCACCGCGGTTGACCAGGCAGAGGAAGCTCCGGCACCTCACTCACCAAGACATTGGCTTCTTCCATTCCGACGAGTCTTCGTTTCTTCCCGGTTTGCCGGAGTTTCGCTCCCACGCCGGTTCCGACCACCGGTCTTTCTCTGCTCTGCCGCAACCGCTGCCGCTTCCCGAAGCGCCGTTGACCCGTCGAGCAAAATCAATCAGCTCCAGTTCCGTAAATCGTCGTCGCCTTTCATCTTCGTTAGAACAACATGGCTTTGCTATTTCGAGGAGCACAGTGTATCAAGAAGCAGTGGCACGTACAAAACCTACACTTAATTTGGATAAATCCTGCTTGGATTCTACTCTTGCAAATGCAAATTACAATCTGAGAGAGCATACTCCCGCAGCAAGTTTCTTGACAGGCAATAGTTCATGGAAAAACCGCAGAGCAGTGTCTCATGATGATGATTCTGAAGGTAATTCCCACTTGAAGTATGGTGTTGCTGCCAAGCCCAAGAGTGCCCCAACAAGTGTACTCACTAGTCCTGATACTAGTCCATGTAGATCAAGCAATGTAGATTTCTTTGATCCTACCGCCAACTTCTCTTTGGAAGTTAATGACAAATCAAAAATGTTATCAGCTAAAACTGTTCATAGTCCAGACCAATTTTCTATTCATTGCCCTCTAAGCCTCACTCGTTACTTCAATCCTAAGATTGAGGAAGGATCTCAAAACCATAAATTTTTGTCCAGGGTGTGCCCTGAAAATAACCTTCTTGATTCACATCCCTTACCCCTTCCTCCTAGAGCTTCATCACCAGAACAATTATCTGTTGTGCTGCATCAATCAAGTACCATGAACCAATCAAGTATCATGCATCACGCTACTGAAAATCTGCCTTCAGTGAAAGGTCGATGGCAGAAAGGAAAACTTATTGGACGTGGTACCTTTGGAAGTGTTTTTCATGCAACCAACATAGAAACTGGAGCCTCGTGTGCAATGAAAGAGGTCAATTTAATTCATGATGATCCTACATCTGCCGAGTGCATTAAACAGCTGGAACAGGAAATCAAAATTCTCCGTCAACTACACCATCCCAACATTGTGCAGTATTATGGAAGTGAAACAGTTGGCGATCATTTGTACATATATATGGAGTATGTCTACCCGGGATCAATCAGTAAATTTATGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTTGCAATTTTACAAGGCATATTCTCTCGGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATGAATCAGGCACTGTCAAGCTTGCAGATTTTGGGCTGGCGAAAATACTAATGGGGAATTCATATGATCTTTCTTTTAAGGGTAGTCCTTATTGGATGGCTCCAGAGGTCGTGAAAGGTTCCATAAAGAACGAATCCAATCCTGATGTTGTCATGGCCATTGATATATGGAGTTTAGGGTGCACCATTCTAGAAATGTTGACAGGGAAACCTCCTTGGAGTGAAGTTGAAGGGCCTTCAGCCATGTTCAAGGTACTACAAGAGTCTCCGCCTATACCCGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAGTGTTTCCAAAGGGACCCTGCAGATCGACCATCTGCAGCAACGCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGATCAACATGTTCTAGTTCATTCACAATCCTATCCAAGAGGAGACCTAGGACCAGGAGGTAATTCAGCTAGTCCTAGAGACACTACCAAAAATAGACGTGGCATAATGCAAGCCTCCATTAGCACACGGATTTTTAACAATATTCAGAAATTAATCGGCGATACTTCCGAACAAAGCAATGCTAAGGAGTCTAATCATATTATACCTTATCTTCACTCTCATGTTCCAGAAGTGAAAATTCTTCAATCTCCATTGGAATCTGGTACCCTCAATTTCATGTCTGTTGCAAATTCCAAAAACATTTCCTCCGTCATGAGAATGATCACGAACTTCTGA	2109	0.4391	MSLSRKPLSPSPSTPAKQIDAGDLAPAPRLTRQRKLRHLTHQDIGFFHSDESSFLPGLPEFRSHAGSDHRSFSALPQPLPLPEAPLTRRAKSISSSSVNRRRLSSSLEQHGFAISRSTVYQEAVARTKPTLNLDKSCLDSTLANANYNLREHTPAASFLTGNSSWKNRRAVSHDDDSEGNSHLKYGVAAKPKSAPTSVLTSPDTSPCRSSNVDFFDPTANFSLEVNDKSKMLSAKTVHSPDQFSIHCPLSLTRYFNPKIEEGSQNHKFLSRVCPENNLLDSHPLPLPPRASSPEQLSVVLHQSSTMNQSSIMHHATENLPSVKGRWQKGKLIGRGTFGSVFHATNIETGASCAMKEVNLIHDDPTSAECIKQLEQEIKILRQLHHPNIVQYYGSETVGDHLYIYMEYVYPGSISKFMREHCGAMTESVVCNFTRHILSGLAYLHSNKTIHRDIKGANLLVNESGTVKLADFGLAKILMGNSYDLSFKGSPYWMAPEVVKGSIKNESNPDVVMAIDIWSLGCTILEMLTGKPPWSEVEGPSAMFKVLQESPPIPETLSSVGKDFLQQCFQRDPADRPSAATLLKHAFVQNLHDQHVLVHSQSYPRGDLGPGGNSASPRDTTKNRRGIMQASISTRIFNNIQKLIGDTSEQSNAKESNHIIPYLHSHVPEVKILQSPLESGTLNFMSVANSKNISSVMRMITNF*	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso14g0685	702	SMART	serkin_6	326	587	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso14g0685	702	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA	7	698	-	-
	Gso14g0685	702	ProSiteProfiles	Protein kinase domain profile.	326	587	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso14g0685	702	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	7	698	-	-
	Gso14g0685	702	MobiDBLite	consensus disorder prediction	601	621	-	-
	Gso14g0685	702	Gene3D	Transferase(Phosphotransferase) domain 1	323	605	-	-
	Gso14g0685	702	Pfam	Protein kinase domain	327	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso14g0685	702	MobiDBLite	consensus disorder prediction	1	26	-	-
	Gso14g0685	702	ProSitePatterns	Protein kinases ATP-binding region signature.	332	355	IPR017441	GO:0005524
	Gso14g0685	702	MobiDBLite	consensus disorder prediction	1	16	-	-
	Gso14g0685	702	SUPERFAMILY	Protein kinase-like (PK-like)	308	604	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso14g0685	Gso-Chr14	6903766	6910647	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Gso14g0685		Pkinase	3.9e-68	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso14g0685	14	6903766	6910647	Gso17g2079	17	40431038	40436780	GST
	Gso14g0685	14	6903766	6910647	Gso6g0301	6	2791431	2797767	PCT
	Gso6g0301	6	2791431	2797767	Gso14g0685	14	6903766	6910647	PCT