LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso14g0626	ATGCCATTCAGGAGCATTGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATTAGCAACATGTATAGAAGAGGAGGAGAAGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTTACCACCACCACCACCACCACCACCATCATCATCATCACAGAGCCGGTGGGCTAATTTGCCACCTGAGTTGCTATTGGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCTTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGTTGTGGAGAGAGATAACAAAGGATGTGATCAAGACACCAGAACAGTGTGGTTTGCTAACTTTCCCCATATCACTGAAGCAGCCTGGTCCAAGAGACTCTCCAATCCAGTGTTTTATTAGGAGAGAAAGAATGACTTCAACATATTGTTTATATCTCGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTAGACGGGCAACATGTACAGAATTTATAATATCATTGGTTGCCGATGATTTCTCTCGGGCTTGCGACACTTATGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTACAATCTTGGATGGGGAGCCCCCGCATGATTCTTCACTTCCACTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCTAATAAGGTTTCTGCTGCTAACTACAAAGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTATGATGCACTTAATCCCCATATCTGCAATCCAAGAAGGAGGGAATGCCCCTACTCCTTTGAAGTTTACCAATTATCTTAATGATTACGCATCTACCACCATCCCAGACACAAAAGGAAAGAAACCAGAAGTTGTTGAGTTTGACTCAACTGGCACTGATAATACTCCAGAATCAATCCAGAGGGCAAGGGAACCATTGATTTTGAAAAACAAAGCTCCTAGATGGCACGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTGTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA	1272	0.4458	MPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPPPPPPPPSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCRLWREITKDVIKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERMTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLVADDFSRACDTYVGKLRSNFLGTKFTILDGEPPHDSSLPLNCKLQQRVHLKQVLPNKVSAANYKVATVSYELNVLRTRGPRRMRCMMHLIPISAIQEGGNAPTPLKFTNYLNDYASTTIPDTKGKKPEVVEFDSTGTDNTPESIQRAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso14g0626	423	Gene3D	-	53	106	-	-
	Gso14g0626	423	MobiDBLite	consensus disorder prediction	41	55	-	-
	Gso14g0626	423	SUPERFAMILY	F-box domain	45	104	IPR036047	GO:0005515
	Gso14g0626	423	PANTHER	TUBBY-LIKE F-BOX PROTEIN	1	423	-	-
	Gso14g0626	423	PANTHER	TUBBY-RELATED	1	423	-	-
	Gso14g0626	423	SUPERFAMILY	Tubby C-terminal domain-like	109	423	IPR025659	-
	Gso14g0626	423	Pfam	F-box domain	60	105	IPR001810	GO:0005515
	Gso14g0626	423	ProSitePatterns	Tub family signature 1.	351	364	IPR018066	-
	Gso14g0626	423	MobiDBLite	consensus disorder prediction	26	59	-	-
	Gso14g0626	423	Gene3D	Tubby Protein; Chain A	118	423	IPR025659	-
	Gso14g0626	423	PRINTS	Tubby superfamily signature	176	192	IPR000007	-
	Gso14g0626	423	PRINTS	Tubby superfamily signature	192	216	IPR000007	-
	Gso14g0626	423	PRINTS	Tubby superfamily signature	242	269	IPR000007	-
	Gso14g0626	423	PRINTS	Tubby superfamily signature	333	350	IPR000007	-
	Gso14g0626	423	PRINTS	Tubby superfamily signature	351	367	IPR000007	-
	Gso14g0626	423	PRINTS	Tubby superfamily signature	380	399	IPR000007	-
	Gso14g0626	423	PRINTS	Tubby superfamily signature	401	423	IPR000007	-
	Gso14g0626	423	ProSitePatterns	Tub family signature 2.	408	423	IPR018066	-
	Gso14g0626	423	Pfam	Tub family	121	418	IPR000007	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso14g0626	Gso-Chr14	6156148	6159909	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Gso14g0626		Tub	5.9e-103	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso14g0626	14	6156148	6159909	Gso17g2127	17	40966720	40970643	GST