LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso14g0607	ATGTATACGAGCCAAGCCTTTTCTTCAGGGTCCTATGCGGATATGTTGTCTGGGAATCCTCTTTTACCTCATAACTACAGTGAAACTGTAGAAGGACAAAATGAGTTGAAGTTCATCACATCCATGAGGGACACAATGACTATGCAGCCTATTGATGGGCATTCCAATGCCGCCGCCACAGGTGATTCAGAGTCTTTTGTGAATGCTGGAGATTCCCATTCCCATGTTATTCCAAGGACAACACAATTGGGAGTTGTGGAGAGTGAGCAAAATGTACTGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCTGTCCCTACCTTTCCATATCAGTATCCCGGCACCAGTTTCTCTTCACTTATGACTGCTTGTATCCCAAATTCAAAGGACTCTTCATCTCATAAAGATGATGAGACCAGCCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTAGAGGATTTCACAAAAGGGAGGATTTGTATAATCCACATGCCTCAATGTGCATTAGTGAAGGCCGAAATGATGGATTGCAAGGTTTTTCCAACAATGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTAAATGTCCGAAAGGCTTTGAAGCAAACTGGTTTGGAAAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCAGATGGAAAATCTACCAGCCAATCCGTGCAGATATCTTCAGGCCCCAATGGTTCTGCTGCAAACTCTTCATGTGAGCTATCACCTGCAGAACGGCAGAATTTGTTGGACAAGAAGACAAAGCTTTTGTCAATGCTGGATGAGGTGGATAAAAGATACAGACAGTACTGCCACCAAATGCAGATTGTGGTGTCATCTTTTGATATGGTTGCTGGATGTGGAGCAGCTGAACCATACACTGCACTTGCCTTGCGCACAATATCGCGCCACTTTCGGTGTTTGCGCGATGCCATTAGCAGCCAAATTCAAGTGACTCAAAGGAACCTCGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAACAAAAGGCCCTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAGTACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCTAAGGATTCAGAGAAAATTATGCTAGCAAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAACTGGTTCATTAATGCAAGGGTGCGTCTATGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAATTTGGTGATTCTGAGATGAGCAGCAATCTATTATCATCAGAGAACACACTCAAAGCTCCAAGAGATGATGTTCAAGCTTCTGACAATAAAAGGGAAGAGTCCCAGGACAACTTAATAAACGTTGATGATAGTGTTCAGCATCATGGGTTGAAGTTAGATCATGCCTCGGAATTGGACAGAGGGATCCAAAGCAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGAAAATTGCAAGGTGACCAAAGGTTCAACATGAACAACAGCAATAACAATAGTCCTTATTATGGTGATGGCTGCGTAATGGCTTCTACTCCTGCCACATATGATTTACCAGAGTTAGGTAACATTGCTGTCGATGGCCACGTGTCGCTTGCATTGGAATTGAGGAACTGTGAAAGCCAAGGATTTGGTGTGTCAAATGATGACATGCATAAACGACATAAGAAAACATTGGCTTCTTCCCCAGAGACTGATTTGCTAGATTACCATTTCACAGACCCAGGAAAGCAACAAAACAAATTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA	1911	0.438	MYTSQAFSSGSYADMLSGNPLLPHNYSETVEGQNELKFITSMRDTMTMQPIDGHSNAAATGDSESFVNAGDSHSHVIPRTTQLGVVESEQNVLNQGLSLSLGSVMPSIASVPTFPYQYPGTSFSSLMTACIPNSKDSSSHKDDETSLQRELRNAECMASLASRGFHKREDLYNPHASMCISEGRNDGLQGFSNNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSVQISSGPNGSAANSSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISSQIQVTQRNLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSVLRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLSSENTLKAPRDDVQASDNKREESQDNLINVDDSVQHHGLKLDHASELDRGIQSSDHGENAMDPRIGKLQGDQRFNMNNSNNNSPYYGDGCVMASTPATYDLPELGNIAVDGHVSLALELRNCESQGFGVSNDDMHKRHKKTLASSPETDLLDYHFTDPGKQQNKFGNPHLLHEFVV*	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso14g0607	636	SMART	HOX_1	380	444	IPR001356	GO:0003677
	Gso14g0607	636	MobiDBLite	consensus disorder prediction	510	541	-	-
	Gso14g0607	636	MobiDBLite	consensus disorder prediction	239	266	-	-
	Gso14g0607	636	Pfam	Homeobox KN domain	397	436	IPR008422	GO:0003677\|GO:0006355
	Gso14g0607	636	ProSiteProfiles	'Homeobox' domain profile.	377	440	IPR001356	GO:0003677
	Gso14g0607	636	Gene3D	-	377	454	-	-
	Gso14g0607	636	MobiDBLite	consensus disorder prediction	229	266	-	-
	Gso14g0607	636	Pfam	Associated with HOX	195	338	IPR006563	-
	Gso14g0607	636	MobiDBLite	consensus disorder prediction	470	487	-	-
	Gso14g0607	636	MobiDBLite	consensus disorder prediction	454	469	-	-
	Gso14g0607	636	MobiDBLite	consensus disorder prediction	453	489	-	-
	Gso14g0607	636	PANTHER	BEL1-LIKE HOMEODOMAIN PROTEIN 10	29	599	-	-
	Gso14g0607	636	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	29	599	-	-
	Gso14g0607	636	Coils	Coil	201	221	-	-
	Gso14g0607	636	SUPERFAMILY	Homeodomain-like	381	447	IPR009057	-
	Gso14g0607	636	SMART	prehox3	189	339	IPR006563	-
	Gso14g0607	636	CDD	homeodomain	380	441	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso14g0607	Gso-Chr14	5941507	5946045	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Gso14g0607		POX	4.5e-51	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0255	4	2349822	2353702	Gso14g0607	14	5941507	5946045	PCT
	Gso6g0234	6	2272219	2276663	Gso14g0607	14	5941507	5946045	PCT