Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0387 ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCAACAATGGCAGTCATTGCTCTGAAGTGCCCCTCCATTGAAGTGGCTGTTGTTGACATCTCCAAATCCCGGATTGCAGCATGGAACAGTGACCAGCTTCCTATCTATGAGCCAGGCCTTGATGGTGTGGTGAAGCAATGTCGTGGCAAGAACCTTTTCTTCAGCACTGATGTTGAGAAACATGTCTATGAGGCAGACATAGTGTTTGTCTCTGTCAACACCCCGACAAAAACTCGCGGTCTTGGAGCCGGTAAGGCCGCGGATTTAACGTACTGGGAGAGTGCAGCACGCATGATTGCTGATGTATCCAAGAGTGACAAGATTGTGGTGGAGAAATCCACTGTCCCTGTGAAAACTGCTGAGGCCATAGAGAAAATTTTGACTCACAATGGCAAGGGAATCAAGTTCCAAATCCTTTCAAACCCTGAATTCCTTGCTGAGGGAACTGCAATCCAAGATCTTTTCAATCCGGACCGTGTCCTCATTGGAGGCAGGGAGACCCCAGAAGGCCAAAAAGCCATTCAAACATTGAAGGATGTATATGCTCATTGGGTTCCTGAGGGAAGAATCCTAACCACAAACCTGTGGTCTGCTGAACTGTCCAAGCTTGCTGCTAATGCCTTCTTGGCACAGAGAATTTCATCTGTGAATGCTATGTCAGCACTTTGTGAGGCCACTGGGGCAAATGTCACACAAGTGTCCTATGCTGTTGGCACTGACACAAGGATTGGACCAAAGTTCCTGAATTCTAGTGTTGGTTTTGGTGGCTCCTGCTTCCAGAAGGACATCTTGAACCTTGTCTACATCTGTGAGTGTAATGGCCTGCCAGAGGTGGCTGAGTACTGGAAACAAGTGATCAAGATCAATGATTATCAGAAGAGCCGGTTCGTGAACCGTGTTGTTTCGTCGATGTTCAACACAGTTGCAACCAAAAAGATAGCCATTCTGGGGTTTGCATTCAAGAAGGACACTGGGGACACAAGGGAGACACCAGCAATTGATGTGTGCAAGGGACTACTCGGTGACAAGGCACGCCTAAGCATATATGATCCACAAGTCACTGAGGACCAAATTCAGAGGGATTTATGGATGAACAAGTTTGATTGGGACCACCCTATTCACTTGCAGCCAACTAGTCCTACAACTGAGAAGAAAGTTAGTGTGGTTTGGGATGCATACGAGGCAACAAAGGATGCAGATGGTGTCTGCATTCTCACTGAGTGGGATGAGTTCAAGACTCTTGATTATCAGAAGGTGTATGACAACATGAGAAAACCAGCATTTGTTTTTGATGGAAGGAACATTGTGGATGTGGAGAAGCTACGTGATATTGGTTTCATTGTGTACTCAATTGGGAAGCCACTGGATCCATGGCTCAAGGACATGCCAGCTGTGGCATAA 1443 0.4692 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVYEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNGKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQTLKDVYAHWVPEGRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVTQVSYAVGTDTRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPTTEKKVSVVWDAYEATKDADGVCILTEWDEFKTLDYQKVYDNMRKPAFVFDGRNIVDVEKLRDIGFIVYSIGKPLDPWLKDMPAVA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0387 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Gso13g0387 480 Gene3D - 1 208 - -
Gso13g0387 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 480 - -
Gso13g0387 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Gso13g0387 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Gso13g0387 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Gso13g0387 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Gso13g0387 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Gso13g0387 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Gso13g0387 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Gso13g0387 480 Gene3D - 209 240 - -
Gso13g0387 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Gso13g0387 480 Gene3D - 241 477 - -
Gso13g0387 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Gso13g0387 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0387 Gso-Chr13 15515081 15518042 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0387 13 15515081 15518042 Gso19g0249 19 3569513 3572509 GST
Gso13g0387 13 15515081 15518042 Gso18g2161 18 54666243 54669018 PCT
Gso13g0387 13 15515081 15518042 Gso8g2005 8 20846597 20849385 PCT
Gso18g2161 18 54666243 54669018 Gso13g0387 13 15515081 15518042 PCT
Gso8g2005 8 20846597 20849385 Gso13g0387 13 15515081 15518042 PCT