Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1960 ATGATGCGGTTTGTGATGTCTTCAAGCTCCAAACGTGTGTCTAAGTGCTTCATTTTTGTGTTCCTGGCTTCCCTACACTTTGGATCCAACGCTCAACTCTTACCACAAGATGAAGTGAAATTGCTACAAGCAATATCAGACAAGGTAGAGAACCTGAATTGGAAAGTTACACAACGTTCTTGCAACGGGGATAGAGGATTTGATAACAGGAACATTTCAAGGGATAATAAGTCTCAAATCATAAGGAATGTCACGTGTGATTGCTCTTTCAACAATAACACTACTTGCCATGTGACAGCAATTGCGCTCAAGGGTCTCAATATATCTGGACCTATACCCGATGAATTTGGAAATTTAACTCGACTAGAAATACTTGATCTCACTTGGAATAATTTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTCTCATCAGTTGTCACTCTGAACCTTTTGGGAAATCGACTTACTGGTTCAATTCCCTCAGAAATTGGTGACATGGCTAGTCTGCAAGAACTGATCTTGGAAGATAATCAACTTGAGGGACCTCTTCCCCCGAGCCTTGGAAAAATGAGCAACTTGCTGAGATTACTTCTTTGTGCAAATAATTTCACAGGGATAATACCAGAAACATATGGAAATCTAAAGAATCTCACTCAGTTTAGGATAGATGGAAACAGTTTATCTGGGAAAATACCCAGTTTTATTGGGAACTGGACCAAACTTGATAGATTGGATTTGCAGGGCACATCCTTGGACGGCCCAATTCCTTCTGTCATATCTTACTTGACAAATTTGACAGAATTGAGGATATCTGATTTGAAGGGACCAACTATGACATTTCCTAATCTGAAGAATTTGAAACTTTTGCTAAAACTGGAATTGAGGAATTGCTTAATAACTGGTCCCATTCCAAACTACATTGGAGAAATAGAAAGTTTGAAAATCATAGATCTGAGCTCCAACATGTTAACAGGTTCAATCCCAGATTCATTTCAGGATTTGGGAAATCTAAATTACTTGTTTCTGACAAACAATTCTCTAAGTGGACCAATTCCTGATTGGATACTGAGCATAAAAAAGCATATTGATTTATCTTTGAACAATTTCACAAAGACTTCTGCAAATATTTGCCAAATGCTGGATGTGAACTTAGCTTCAAGCCTCTCTCGCACAGCAAACACTTCAATATCTTGTTTGAAGATTGGCCAACCTTGTTCAGGAAAACCCCAGTTTCATTCACTGTTCATAAACTGTGGAGGACCTGAAACAAAGTTTGAGGGCAATGAATATGAAGCTGACCTCAGTCCATTTGGCATTTCAAACTATGTTCCTGGTAATAGTGGCAAATGGGCTTATAGCAGCACTGGAGTATATCTAGGAAATGATAAAGCTGATTATATAGCAACAAATCAGTTTTCTTTGGATATTAATGGCCCTGATTACTACCACACAGCCCGCATAGCTCCTCTGTATCTTAATTACTATGGCCTTTGTATGCTGAACGGCAATTATAAAGTGAAACTTCATTTTGCTGAGATAGCATTCTCTGATGACCACTCATATAGCAACCTTGGAAAGCGTGTATTTGATGTATCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTGCGAAAGAAGCTGGGGGAGTTGGTAAGGGAATCACTAGGGAGTTTAATGTTAATGTTACAGAAAGCACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCATTCCTATAAGAGGTGTATATGGACCTCTCATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTTATGCACATGGGTTCTCTACTGGAACAATTGTTGGAATTGTAGCTGGGGCATGTGTGATTGTCATATTGATGCTCTTTGCTCTTTGGAAGATGGGTTTCCTTTGTCAGAAAGATCAAACAGACCAAGAACTTCTAGGTCTGAAAACAGGTTATTTCAGTTTAAGACAAATTAAAGCTGCTACTAATAACTTTGACCCAGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATTCAAGGGTGTACTATCAGATGGTGCTGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAATCGTGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAACCTTGTGAAACTTTATGGCTGTTGCATTGAAGGAAACCAGCTGCTGCTAGTATATCAGTACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAACATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGCAAATTTGTCTGGGTATTGCAAAGGGCTTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTGCACAGGGATATTAAGGCAACCAATGTCTTACTTGATAAACATCTGCATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAATACTCATATCAGCACAAAAGTTGCTGGGACAATTGGTTACATGGCTCCTGAGTATGCTATGAGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGAATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTATAGGCCAAAGGAGGAGTTTGTATATCTTTTAGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAGGCCATGAGAATGCTGCAGTTAGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCATGTATGTCATCAGTAGTGAGCATGCTTGATGGAAAAACTCCAATTCAAGCACCAATTATTAAACGCGGTGACAGTGCAGAAGATGTAAGATTTAAAGCCTTTGAGATGCTATCACAAGACAGTCAAACTCAAGTCTCTTCTGCATTCTCAGAAGATAGTATAGAGCAAAGAAGCAAATCAATGGGGGGGCCATGGCTTGACTCCTCCATATCACTTCCAAGTAGAATTGATTAG 3024 0.3972 MMRFVMSSSSKRVSKCFIFVFLASLHFGSNAQLLPQDEVKLLQAISDKVENLNWKVTQRSCNGDRGFDNRNISRDNKSQIIRNVTCDCSFNNNTTCHVTAIALKGLNISGPIPDEFGNLTRLEILDLTWNNFNGSIPKSLGRLSSVVTLNLLGNRLTGSIPSEIGDMASLQELILEDNQLEGPLPPSLGKMSNLLRLLLCANNFTGIIPETYGNLKNLTQFRIDGNSLSGKIPSFIGNWTKLDRLDLQGTSLDGPIPSVISYLTNLTELRISDLKGPTMTFPNLKNLKLLLKLELRNCLITGPIPNYIGEIESLKIIDLSSNMLTGSIPDSFQDLGNLNYLFLTNNSLSGPIPDWILSIKKHIDLSLNNFTKTSANICQMLDVNLASSLSRTANTSISCLKIGQPCSGKPQFHSLFINCGGPETKFEGNEYEADLSPFGISNYVPGNSGKWAYSSTGVYLGNDKADYIATNQFSLDINGPDYYHTARIAPLYLNYYGLCMLNGNYKVKLHFAEIAFSDDHSYSNLGKRVFDVSIQGFKYLKDFNIAKEAGGVGKGITREFNVNVTESTLEIHLSWAGKGTNAIPIRGVYGPLISAITVTPNFKVYAHGFSTGTIVGIVAGACVIVILMLFALWKMGFLCQKDQTDQELLGLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVFKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYQYMENNSLARALFGKEHERMQLDWPRRMQICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLHAKISDFGLAKLDEEENTHISTKVAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPCMSSVVSMLDGKTPIQAPIIKRGDSAEDVRFKAFEMLSQDSQTQVSSAFSEDSIEQRSKSMGGPWLDSSISLPSRID* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1960 1007 Gene3D Transferase(Phosphotransferase) domain 1 744 950 - -
Gso12g1960 1007 Pfam Leucine Rich Repeat 121 142 IPR001611 GO:0005515
Gso12g1960 1007 Pfam Protein tyrosine and serine/threonine kinase 672 938 IPR001245 GO:0004672|GO:0006468
Gso12g1960 1007 SUPERFAMILY L domain-like 95 370 - -
Gso12g1960 1007 Pfam Malectin domain 415 596 IPR021720 -
Gso12g1960 1007 CDD STKc_IRAK 674 941 - -
Gso12g1960 1007 Gene3D Phosphorylase Kinase; domain 1 635 743 - -
Gso12g1960 1007 Gene3D Ribonuclease Inhibitor 218 404 IPR032675 -
Gso12g1960 1007 ProSiteProfiles Protein kinase domain profile. 668 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1960 1007 MobiDBLite consensus disorder prediction 974 1007 - -
Gso12g1960 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 300 356 - -
Gso12g1960 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 386 993 - -
Gso12g1960 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 301 - -
Gso12g1960 1007 SUPERFAMILY Protein kinase-like (PK-like) 652 939 IPR011009 -
Gso12g1960 1007 SMART serkin_6 668 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1960 1007 Gene3D - 413 601 - -
Gso12g1960 1007 PANTHER - 300 356 - -
Gso12g1960 1007 PANTHER - 76 301 - -
Gso12g1960 1007 PANTHER - 386 993 - -
Gso12g1960 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Gso12g1960 1007 Gene3D Ribonuclease Inhibitor 57 212 IPR032675 -
Gso12g1960 1007 Pfam Leucine rich repeat 292 348 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1960 Gso-Chr12 43595468 43608079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1960 17 1005 Receptor kinase-like Gene Family AT1G53440 60.757 0.0 1199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1960 PK_Tyr_Ser-Thr 8.4e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1957 8 19870284 19887997 Gso12g1960 12 43595468 43608079 PCT