Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1330 ATGTTTAGCAAAGAAACAAGTCAGGAACTAGGGTTGATCAATTGGAGGAGCAGGGTTACTCTGATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACAGTTGACCGGAGTTGATATAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGAGAATTGCGAATTGCCACTGAAGGTTTTAGTTCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGCAGTCTATAAGGGAAAGCTGAGAAACGGTTCTTTGGCAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGATCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTCAAGTTACATGGATGCTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGTAGCATCCAATTAAGTTGGCCTGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACGCATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGATCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACTCGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTACAAAATCGGATGTATATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTCACAAGGGTTTGGGATTTGTATGAGAGTGGAGAGGTAGAAAAACTGGTGGATGCTTTTCTAGAAGGAGACTTCAATATTGAGGAGGCAATCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGGCCTTCAATGTCCAGTGTGCTTGAGATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGGAAACAAAAAGGCAAGGCAGAAGTGGATAGTAAATCTTCGTTGGCTGAAGGGAAGCAAGACGAGTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATAGAAGCAATTAG 1233 0.4201 MFSKETSQELGLINWRSRVTLMTSCFHLFRKKGSSSGTQLTGVDIDVSEIQNVNIYTYRELRIATEGFSSANKIGQGGFGAVYKGKLRNGSLAAIKVLSAESRQGIREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGSGHSSIQLSWPVRRNICIGVARGLAFLHEEVRPRIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTTKSDVYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRVWDLYESGEVEKLVDAFLEGDFNIEEAIRFCKIGLLCTQDSPQLRPSMSSVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAGKQKGKAEVDSKSSLAEGKQDESSSSGTMSSFATMTFTAIYDRSN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1330 410 SUPERFAMILY Protein kinase-like (PK-like) 47 339 IPR011009 -
Gso12g1330 410 PANTHER RECEPTOR-LIKE KINASE 22 396 - -
Gso12g1330 410 MobiDBLite consensus disorder prediction 367 382 - -
Gso12g1330 410 Gene3D Phosphorylase Kinase; domain 1 42 143 - -
Gso12g1330 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Gso12g1330 410 SMART serkin_6 68 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1330 410 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Gso12g1330 410 Pfam Protein kinase domain 70 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1330 410 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 396 - -
Gso12g1330 410 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Gso12g1330 410 CDD STKc_IRAK 74 339 - -
Gso12g1330 410 MobiDBLite consensus disorder prediction 367 394 - -
Gso12g1330 410 ProSiteProfiles Protein kinase domain profile. 68 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1330 Gso-Chr12 31542826 31546982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1330 56 350 Receptor kinase-like Gene Family AT1G53420 55.932 1.73e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1330 Pkinase 9.2e-47 CL0016