Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1250 ATGGTCACTCTCTTCGACTCCCTCGCCGTCGTGCGTCTCCCCACCGCCGCCTTCTCCCCGGCTGCCACCAGCCGGACCTCCGTTTTGCTCCCGCACTGCGCCGGCCTCAGGCTCAGACCCGCCGCCGCCACGCGCTTAGTTGCGTCCCCCGCTCGCAGAATCGCTTCACGCGCCGCGCGCGTCGTATGTGAGGCTCAGGATACCGCCGTCGAAGTGGCTCCTATTACTGATGCAAATTGGCAATCCCTTGTCCTTGAATCTGAATCTGCTGTTTTGGTTGAATTCTGGGCGCCATGGTGTGGTCCCTGCCGAATGATTCACCCTATAATAGATGAACTGGCAAAGCAATATGCTGGGAAGCTCAAGTGTTACAAACTCAACACGGATGAGAGCCCTTCAACCGCTACTCGGTATGGAATTCGAAGCATCCCTACTGTTATGATCTTCAAGAATGGTGAGAAGAAAGATACAGTTATTGGTGCTGTGCCCAAGTCAACATTGACTGCGAGCATAGAAAAATTCGTATGA 528 0.5455 MVTLFDSLAVVRLPTAAFSPAATSRTSVLLPHCAGLRLRPAAATRLVASPARRIASRAARVVCEAQDTAVEVAPITDANWQSLVLESESAVLVEFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFV* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1250 175 PRINTS Thioredoxin family signature 91 99 - -
Gso12g1250 175 PRINTS Thioredoxin family signature 99 108 - -
Gso12g1250 175 PRINTS Thioredoxin family signature 139 150 - -
Gso12g1250 175 Gene3D Glutaredoxin 72 175 - -
Gso12g1250 175 PANTHER GEO12009P1 3 175 - -
Gso12g1250 175 TIGRFAM thioredoxin: thioredoxin 76 174 IPR005746 GO:0015035
Gso12g1250 175 PANTHER THIOREDOXIN M-TYPE PROTEIN 3 175 - -
Gso12g1250 175 Pfam Thioredoxin 72 172 IPR013766 -
Gso12g1250 175 CDD TRX_family 78 172 - -
Gso12g1250 175 ProSiteProfiles Thioredoxin domain profile. 52 175 IPR013766 -
Gso12g1250 175 ProSitePatterns Thioredoxin family active site. 92 110 IPR017937 -
Gso12g1250 175 SUPERFAMILY Thioredoxin-like 69 174 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1250 Gso-Chr12 22897447 22899915 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1250 12 22897447 22899915 Gso12g1250 12 22897447 22899915 ECH
Gso12g1250 12 22897447 22899915 Gso6g2054 6 37937286 37940560 GST
Gso11g2973 11 45523777 45526500 Gso12g1250 12 22897447 22899915 PCT
Gso12g1250 12 22897447 22899915 Gso11g2973 11 45523777 45526500 PCT