Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1221 ATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCTAAACACAAAAAGATACTGGAAGGACTTCTTAAACTACCAGAGAATAAGGAGTGCGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCCGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACATGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTCCGAGAAGAGAAAAGTCCTTCACATTGGCAAAAGCCTGTGGAAAGAGGTGGGCATGATTATGCAGCTGTGTCTGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCACATGCAATTCCTGCTACAAGAATTAGTGTTCCCGCTCCACCCAAAGGGCCTGAGCTGGTAACTACTGTGGCAAAACCTCAACATGTTGAGAAAGTGGAACCTGTTGCACCATCACCACAAGCTGAAACTTCAAAACAGACTACTGACACAACACAAAATTCCCCTTCAAAAGTTGACTATGCTACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCAGGGGCAGCTGATGCTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATCGACAGCTGAGAAGACTGATGCTACAAAAGCAGTTGAGAGTACACCCCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTTAACTACAGAAAAACCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGTCCAATGTGGTGTCTCCATTTGCAATGCATCAACAGCAACTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCCGCTAAATCTGCTGGTGGGGATCCCAAGTACCTGGCCAGCTTACAACAACAACAGTCTCTTCTAATGGCTGCTGCCGCCGCTAAATCTGATGGTGGGGATTCCAAGTACCCAACCGCCATACAACAACCTGGGTCCAACATTCCTGTCCAAAGTTGGCCAGCTGCTAGCTTCCCAATGCCTGGTGCAATGCCCATGGGTGGTCTGGAAGAGTTACAGAAACTCATGCAGACAATGAACATGAATGCAGCACATTCAGCAGGGAGTTCATTTCAGTATCCACCATCTAGTTACTATGCTATGGGACAAGTTGCTCCCACTAATGGTACGGCACCAACGGGAGCGAGCAAACCACAGTCAGCATCTCCGGTATCATCTACCACTTCAAAGACAGGGAACGACTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCAAAACACTGA 1503 0.4504 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPHYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKSPSHWQKPVERGGHDYAAVSENTFEERKKIQPSHAIPATRISVPAPPKGPELVTTVAKPQHVEKVEPVAPSPQAETSKQTTDTTQNSPSKVDYATDLFDMLSMDDPNEKGSGAADATADDNNWAGFQSAAEASTAEKTDATKAVESTPQSTSGIEDLFKDSPSVTPSLTTEKPQKDVKNDIMSLFEKSNVVSPFAMHQQQLAMLAQQQSLLMAAAKSAGGDPKYLASLQQQQSLLMAAAAAKSDGGDSKYPTAIQQPGSNIPVQSWPAASFPMPGAMPMGGLEELQKLMQTMNMNAAHSAGSSFQYPPSSYYAMGQVAPTNGTAPTGASKPQSASPVSSTTSKTGNDYDFSSLTQGMFAKH* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1221 500 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Gso12g1221 500 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Gso12g1221 500 CDD ArfGap 19 117 - -
Gso12g1221 500 MobiDBLite consensus disorder prediction 125 149 - -
Gso12g1221 500 MobiDBLite consensus disorder prediction 269 314 - -
Gso12g1221 500 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gso12g1221 500 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gso12g1221 500 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gso12g1221 500 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 364 499 IPR044520 GO:0005096
Gso12g1221 500 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 369 IPR044520 GO:0005096
Gso12g1221 500 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Gso12g1221 500 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Gso12g1221 500 MobiDBLite consensus disorder prediction 459 489 - -
Gso12g1221 500 MobiDBLite consensus disorder prediction 200 229 - -
Gso12g1221 500 MobiDBLite consensus disorder prediction 269 311 - -
Gso12g1221 500 PANTHER ARF GTPASE ACTIVATOR 1 369 - -
Gso12g1221 500 PANTHER ARF GTPASE ACTIVATOR 364 499 - -
Gso12g1221 500 MobiDBLite consensus disorder prediction 240 259 - -
Gso12g1221 500 MobiDBLite consensus disorder prediction 211 229 - -
Gso12g1221 500 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1221 Gso-Chr12 21543843 21550368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1221 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 2.94e-29 116