Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1130 ATGGTTTCCCGGGAAAATACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTTCCGGATGCCACCTTTGGCGTCAATTCCTCCGCCTTCACATGGCCCCCTAACGCCCTCGACGCTCCTTCCAATGTCGGTGTTGACATTGATGGCTCATTGGGGGATTCTGACGGTCTCAAAGAGTCTGGCTCAAAGAAAAGAGTTAGGTCTGAATCATGTGCTGCTTCTAGCTCCAAGGCATGTCGAGAGAAGTTGCGAAGAGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCCAAAACGGACAAGACTGCTATCCTGATTGATGCTGTCCGAATGGTGACCCAATTAAGGGGTGAAGCCCAGAAGTTGAAAGACACTAATCAGGGTCTTCAAGAAAAGATTAAAGATTTGAAGGCTGAGAAGAATGAATTTCGCGATCAGAAACAGAGGCTCAAGGCAGAGAAGGAGAAGCTGGAGCAGCAGCTGAAATCATTGAATGCACAGCCTAGTTTCATGCCTCCCCCTGCTGCATTTGCGGTGCAAGGCCAAGCCCACGGCAACAAGTTGGTACCTTTTATTAGCTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTTCTCCGACCACCAGTTGCCTAA 699 0.4907 MVSRENTNWLFDYGLIDDIPVPDATFGVNSSAFTWPPNALDAPSNVGVDIDGSLGDSDGLKESGSKKRVRSESCAASSSKACREKLRRDRLNDKFVELGSILEPGRPAKTDKTAILIDAVRMVTQLRGEAQKLKDTNQGLQEKIKDLKAEKNEFRDQKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAFAVQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1130 232 PANTHER BHLH TRANSCRIPTION FACTOR 1 232 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gso12g1130 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 144 IPR036638 GO:0046983
Gso12g1130 232 SMART finulus 81 132 IPR011598 GO:0046983
Gso12g1130 232 Gene3D - 78 157 IPR036638 GO:0046983
Gso12g1130 232 CDD bHLH_AtILR3_like 80 155 - -
Gso12g1130 232 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 232 - -
Gso12g1130 232 Coils Coil 123 178 - -
Gso12g1130 232 MobiDBLite consensus disorder prediction 51 72 - -
Gso12g1130 232 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Gso12g1130 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1130 Gso-Chr12 16030030 16033854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1130 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 67.782 6.47e-107 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g1130 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1130 - - gmx:100783689 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1130 12 16030030 16033854 Gso6g2214 6 42784664 42788864 GST
Gso12g1815 12 41865685 41868094 Gso12g1130 12 16030030 16033854 PCT
Gso11g3048 11 46330418 46332915 Gso12g1130 12 16030030 16033854 PCT
Gso12g1130 12 16030030 16033854 Gso12g1815 12 41865685 41868094 PCT
Gso12g1130 12 16030030 16033854 Gso11g3048 11 46330418 46332915 PCT