Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0594 ATGGATCCTTCCAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAAGAGAGGAAGCCAAGGCCTCAGCCAGAACAGGCTCTGAAGTGTCCCAGATGTGACTCCACCAACACCAAATTCTGCTACTACAATAATTACAGCCTCTCCCAACCAAGGTATTTCTGCAAGTCCTGCAGGAGATATTGGACCAAAGGAGGTACACTTAGGAATGTCCCTGTGGGAGGAGGGTGCAGGAAGAACAAAAGGTCATCATCATCATCATCTTCAACATCAAAGAGAGTTCAAGACCAAGCATTCACACCAAATCCTAACTCTCTCATTGGCCTTCCTTCATTGTCCTATGACTCAAGTGACCTCACTCTTGCATTGGCAAGGCTTCAAAAGCAGTCATGTGGGCAATTGGGGTATGATGAGCATGATCTTTCAATGTTGGGGAACCACCACCCAAGCACCCCATGTGATAATATCCTTGGCATGCATCATCACTCATCATCATCCACAAACCCAGGGTTCTTGGATGCCCTCAGAAGTGGGTTCCTTGGAACACAAAGTAGTAATATGCAGCAGAATCTGTACTATGGATATGGGAATGGAGACATGGGGGAGGTGGACAATGGAAATGCTTCTTGTGGTGGAGAGATGATGATGATGCCTTATAATGATCAAGAAATGAGTGTTGCATCCACACAGGCAGTGACAGTCACCACCATGAAGCAAGAAATTTGCAATGGAAGGGAACCAAGTAGTGAGAGTAGGGTGTTGTGGGGTTTTCCATGGCAATTCAATAATGCTGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTTGGAATGGCATCAATTCATCATGGCATGGACTTCTCAACAGTCCCCTAATGTAG 918 0.4597 MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSTSKRVQDQAFTPNPNSLIGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDLSMLGNHHPSTPCDNILGMHHHSSSSTNPGFLDALRSGFLGTQSSNMQQNLYYGYGNGDMGEVDNGNASCGGEMMMMPYNDQEMSVASTQAVTVTTMKQEICNGREPSSESRVLWGFPWQFNNADTNMGELDSGRASWNGINSSWHGLLNSPLM* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0594 305 MobiDBLite consensus disorder prediction 1 40 - -
Gso12g0594 305 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Gso12g0594 305 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gso12g0594 305 MobiDBLite consensus disorder prediction 90 116 - -
Gso12g0594 305 MobiDBLite consensus disorder prediction 1 22 - -
Gso12g0594 305 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gso12g0594 305 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 304 - -
Gso12g0594 305 MobiDBLite consensus disorder prediction 83 116 - -
Gso12g0594 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 304 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0594 Gso-Chr12 5366720 5369857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0594 1 305 C2C2-Dof Transcription Factor Family AT2G28510 40.909 2.65e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso12g0594 zf-Dof 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0594 - - gmx:100799737 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0594 12 5366720 5369857 Gso11g1248 11 11499694 11501860 GST
Gso15g0388 15 3577859 3579931 Gso12g0594 12 5366720 5369857 PCT
Gso11g3412 11 50018150 50020089 Gso12g0594 12 5366720 5369857 PCT
Gso12g0594 12 5366720 5369857 Gso15g0388 15 3577859 3579931 PCT
Gso12g0594 12 5366720 5369857 Gso11g3412 11 50018150 50020089 PCT