Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0527 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAACCATCCTCAAGCAAGTAATAATGGTGGTGATAACTCCCAGCTTCTTCCACCTTTGCCACCACATCAACCTCATGTGGGAGGTTCTGTTGGTTCAATCAGGCCAGGTTCCATGGCAGATCGAGCTAGGCTAGCTAAGATACCACCACCAGAAGCAGCTCTCAAGTGTCCACGTTGCGATTCCACCAACACTAAATTTTGCTACTTCAACAACTATAGCCTCTCTCAACCACGCCATTTCTGTAAGACTTGTAGGCGCTATTGGACAAGTGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGGTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCTGCATCATCGGAGAAACAAACACTTTCTGGTTCCACGAGTGCAACACCCTCTGGTGGAACCACTCATGAACTAGTTGGTCAGTTGCCACAGCCACCGAACCTTCCCTTCATGGCTTCTCTTCAGAACCTTAACCGTTATGCTGTTGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGAGAACATGGGGTTTCAGATTGGTAATTCTTCAGCTGCTGGTGGAGGAATGGATCAGTGGCGCATACAACAGGTTCCTTTCTTGAATGGTTTTGAATCAACTTCTGCTGGTTCGTACCCTTTTCAAAATGAAGGGATTGAAACACCTTCTGGTTTTGGTGGAGACATAGCAACGAATTCTAGGGTTTCTCAGATGCCATCGGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCAACACTCAATGTTTCAGAAAATAACCAATACTATTCATGGACTGATATGTCAGGTCTTGCTTCTTCTTCCGCTACTCATCTCTTGTAA 924 0.461 MVFSSIPVFVDPPNWQQQPNHPQASNNGGDNSQLLPPLPPHQPHVGGSVGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGALRNVPVGGGCRRNKKNKRSRSKSPASSEKQTLSGSTSATPSGGTTHELVGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNENMGFQIGNSSAAGGGMDQWRIQQVPFLNGFESTSAGSYPFQNEGIETPSGFGGDIATNSRVSQMPSVKMEESGALNLSRSTLNVSENNQYYSWTDMSGLASSSATHLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0527 307 MobiDBLite consensus disorder prediction 117 168 - -
Gso12g0527 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 304 IPR045174 GO:0003700|GO:0006355
Gso12g0527 307 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Gso12g0527 307 MobiDBLite consensus disorder prediction 11 33 - -
Gso12g0527 307 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Gso12g0527 307 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
Gso12g0527 307 MobiDBLite consensus disorder prediction 137 163 - -
Gso12g0527 307 MobiDBLite consensus disorder prediction 11 55 - -
Gso12g0527 307 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0527 Gso-Chr12 4715553 4717239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0527 40 306 C2C2-Dof Transcription Factor Family AT3G55370 44.295 7.94e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso12g0527 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0527 - - gmx:100816635 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0527 12 4715553 4717239 Gso11g1189 11 10700591 10702337 GST
Gso15g0345 15 3123093 3124871 Gso12g0527 12 4715553 4717239 PCT
Gso11g3464 11 50540342 50542117 Gso12g0527 12 4715553 4717239 PCT
Gso12g0527 12 4715553 4717239 Gso15g0345 15 3123093 3124871 PCT
Gso12g0527 12 4715553 4717239 Gso11g3464 11 50540342 50542117 PCT