Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3610 ATGCAGGATCCAACGTTGTTCCAACCCATGAAACCCCACTTTCCCGAACAGGAACAACTTAAATGCCCGCGCTGTGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACCAAAGGTGGCGCCTTGAGAAACATCCCCGTTGGTGGTGGAAGCAGAAAGAACACAAAGCGATCATCTTCATCCAACAACAACACCAAACACGCTTCTCCATCACCCCCAGTTTCTTCTGCACCCGCTCCAGAAATCGACCCGACCCGAACTGACCCCAACCCGGTTGGTGGTGGTGGGTCTTTCCGTTCCCTTTTGGCATCGAGTGGCCATTTGGGCCTAGGGAACCTCTTGGAGGGTCTGAATTCAAGTGGGTCTAATCTCAAAAGTGTGCAAATGGAAGAGTTTGGGGAGAATGTTAGTTCGGGTACTCCAGTGGCGGTTCCGGGTTCGGGTCAGAATCCCGGGTTGGAGATGCAAAGCAATGGGAATGCTGAGAGTTTTCTGAGTTTGCAAAATGGTGATTCAGGCTGTTGTAATGGTACTAATGGCTGGTCTAACCTTGCTATTTTCACTCCTGGGTCAAGCTATCAGTAA 639 0.5023 MQDPTLFQPMKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSSSNNNTKHASPSPPVSSAPAPEIDPTRTDPNPVGGGGSFRSLLASSGHLGLGNLLEGLNSSGSNLKSVQMEEFGENVSSGTPVAVPGSGQNPGLEMQSNGNAESFLSLQNGDSGCCNGTNGWSNLAIFTPGSSYQ* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3610 212 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Gso11g3610 212 MobiDBLite consensus disorder prediction 61 116 - -
Gso11g3610 212 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Gso11g3610 212 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 212 - -
Gso11g3610 212 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 212 IPR045174 GO:0003700|GO:0006355
Gso11g3610 212 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Gso11g3610 212 MobiDBLite consensus disorder prediction 69 90 - -
Gso11g3610 212 MobiDBLite consensus disorder prediction 149 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3610 Gso-Chr11 51793846 51795434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3610 11 127 C2C2-Dof Transcription Factor Family AT1G51700 58.824 3.88e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g3610 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3610 - - gmx:778096 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0202 15 1788804 1790423 Gso11g3610 11 51793846 51795434 GST
Gso11g3610 11 51793846 51795434 Gso7g0104 7 944830 946674 PCT
Gso11g3610 11 51793846 51795434 Gso8g1618 8 15836420 15837897 PCT
Gso7g0104 7 944830 946674 Gso11g3610 11 51793846 51795434 PCT
Gso8g1618 8 15836420 15837897 Gso11g3610 11 51793846 51795434 PCT