Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3464 ATGGTTTTCTCTTCTATTCCGGTCTATTTAGATCCTCCCAATTGGCAGCAGCAACAACAAAATCAACACCAAGCAAATGGAAGTAACAGTCCTCATGAGCTGCTTCCGCCGCTGCCTCAGCCGCCACAGGCCCCTCACGTGGGGGTTGAATCCGAGCAAATCCGGTCCGGTCTGATGGCGGATCGGGCCAAGATTCCGGCACCGGAAGGAGTTCTGAAGTGTCCTCGGTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAGCCAAGGCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCCGTAGGAACAAAAAGAACAAAAGGTCTCGCTCCAAATCTCCGGTTTCTACTGAGAAACCATCACTTCCCAATAATACAAGTGCAATCCCTGAGCTTATTGGTCGTTTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGGATTAACACAGGTGTTAACTTGCGTGAGATTCAAGCACAGAACGCTTCTCAAATGGAGTTTCAAATTGGAGGTCTTGGCAATGGTTCAAGTGTTGCTACTGCAGGAGGAGGAGGAGGAGGAGGAGGAGTGGAGCAGTGGCGGTTTCAGCAGTTTCCTTTCTTGAATGGTTTTGAGTCAACTTCAGCTGCTTCTAATTCCTACCCTTTTCAAAGTGAAATTGTTGAAGGTTTGGTTGGAGATATTAATGCCACAAGTTCTAGGATTACTCAGCTGCCAGCACGGGTTAAAATGGAATATAACGGTGGCTTGAATTTGTCAAGATCTCCTTTGAATGTCTCAGAAAATAGTAACCATTGCTATTCATGGACGGATTTATCTGGTCTTGCATCTTCTTCAGCGAGTCATCTCTTGTAA 936 0.4679 MVFSSIPVYLDPPNWQQQQQNQHQANGSNSPHELLPPLPQPPQAPHVGVESEQIRSGLMADRAKIPAPEGVLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSTEKPSLPNNTSAIPELIGRFPQPFMASLQSMNRYGVGINTGVNLREIQAQNASQMEFQIGGLGNGSSVATAGGGGGGGGVEQWRFQQFPFLNGFESTSAASNSYPFQSEIVEGLVGDINATSSRITQLPARVKMEYNGGLNLSRSPLNVSENSNHCYSWTDLSGLASSSASHLL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3464 311 MobiDBLite consensus disorder prediction 16 54 - -
Gso11g3464 311 MobiDBLite consensus disorder prediction 16 33 - -
Gso11g3464 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 307 IPR045174 GO:0003700|GO:0006355
Gso11g3464 311 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Gso11g3464 311 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Gso11g3464 311 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Gso11g3464 311 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 307 - -
Gso11g3464 311 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3464 Gso-Chr11 50540342 50542117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3464 19 310 C2C2-Dof Transcription Factor Family AT3G55370 38.710 2.57e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g3464 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3464 - - gsj:114374025 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0345 15 3123093 3124871 Gso11g3464 11 50540342 50542117 GST
Gso11g3464 11 50540342 50542117 Gso12g0527 12 4715553 4717239 PCT
Gso11g3464 11 50540342 50542117 Gso11g1189 11 10700591 10702337 PCT
Gso12g0527 12 4715553 4717239 Gso11g3464 11 50540342 50542117 PCT
Gso11g1189 11 10700591 10702337 Gso11g3464 11 50540342 50542117 PCT