Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3412 ATGAATCCTTGTAGTGGACAACCCCAGCAAATGTCTAGCCAGTCAGTGGAGAAGAAGCCAAAGCCTCATCCAGAACAAGCTCTGAAATGCCCAAGATGTGACTCCACCAACACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACAAAAGGAGGAACACTGAGGAATGTTCCAGTAGGAGGAGGATGCAGGAAGAAGAGATCATCATCATTAAAGAGGGCTCAAGATCAAACATTGACACCCAATCTTAATCCACTCACTACACTCCCTCATTTGTCTTATGACTCCAATGACTTCACTCTAGCAGTAGCTAGGTTTCAAAAACAATCAAGTGGACAATTGGGTTACAATGATCGTGATCTTTCAACTTTGGGGAACCCCACCACAGGCTCATTTTGTGACATTCTTGGCAATTCAGGCATGAATCCCTCCTCAGCAAACCCTTCATTTTTGGATGCAATTCGAACTGGTTTCCTTGAGACACAAAACCATCTTCAGAATTTGTATTGTATGTATGGAAACGGGGACTTGGGGGAGGTGGATAATGGCAATTCTGGTGTGGTTGGGGTTAGTGGAGAGATGATGCTCCCTTACGATCAAGTGATAATGAGCAATGCAACAACTCAATCAGTGAGTGTAATGAAGCAAGAAATGTGTAGTCGCAGAGAACAAAGTGAAAGGAGGGTGTTGGGGGGGTTCCCATGGCAGATTAATGCAGACACTAACATTGGCGAACTTGACTCAGGAAGAACAATTGCAAGTTGGAACAGTTTCACAAATTCTTGGCACGGGTTTCTCCAAAGTCCTCTAATGTAG 858 0.4324 MNPCSGQPQQMSSQSVEKKPKPHPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSLKRAQDQTLTPNLNPLTTLPHLSYDSNDFTLAVARFQKQSSGQLGYNDRDLSTLGNPTTGSFCDILGNSGMNPSSANPSFLDAIRTGFLETQNHLQNLYCMYGNGDLGEVDNGNSGVVGVSGEMMLPYDQVIMSNATTQSVSVMKQEMCSRREQSERRVLGGFPWQINADTNIGELDSGRTIASWNSFTNSWHGFLQSPLM* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3412 285 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Gso11g3412 285 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Gso11g3412 285 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 13 284 - -
Gso11g3412 285 MobiDBLite consensus disorder prediction 1 17 - -
Gso11g3412 285 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Gso11g3412 285 MobiDBLite consensus disorder prediction 1 28 - -
Gso11g3412 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 284 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3412 Gso-Chr11 50018150 50020089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3412 3 131 C2C2-Dof Transcription Factor Family AT5G60200 52.143 2.39e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso11g3412 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3412 - - gmx:778104 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0388 15 3577859 3579931 Gso11g3412 11 50018150 50020089 GST
Gso11g3412 11 50018150 50020089 Gso12g0594 12 5366720 5369857 PCT
Gso11g3412 11 50018150 50020089 Gso11g1248 11 11499694 11501860 PCT
Gso12g0594 12 5366720 5369857 Gso11g3412 11 50018150 50020089 PCT
Gso11g1248 11 11499694 11501860 Gso11g3412 11 50018150 50020089 PCT