Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2878 ATGAGATCAGTAAGTTCCCCTGGTTTCTTCTTCCTTTTGTTTCTTGCTGCCTTTAGCTTTGCCAACTTTGCTTCTGGAGCCACTCTGCTTCAAGATGAAGTGAAAGCTCTGGAAGATATAGCCAAGACACTTGGGAAGAAGGACTGGGATTTCAACGTAGATCCGTGCAGTGGACAACGTAATTGGACTTCTGCGGTTCAAGTGAAAGGGAGTGAAAACAATGTCACATGTGATTGTACCTTTGCCAATGGCACCGTCTGCCATGTCACCAACATACTTTTGAAATCACAAAACCTCCCTGGCACTCTCCCTCGGGATTTGTTCAGGTTGCCTTTCCTTCAAGAAATTGACCTTACTCGCAACTACCTAAACGGTACAATTCCTAAAGAATGGGGCTCCACGAAACTTGCCATAATTTCCCTCCTAGGAAATCGATTAACAGGTTCAATACCAATAGAGATAGCAAACATATCCACTCTTCAAAGTTTGGTCTTGGAGGGCAATCAACTGTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTAACCCAAATTCAAAGACTGCTACTTTCCTCCAACAATTTTATTGGAGAATTACCAGTAACATTGGTCAAGCTCACTACGTTGCAGGATATTCGAATTGGGGATAATCAATTCTCTGGGAAGATACCTAATTTTATTCAAAGCTTGACAAGTCTCCAAAAACTAGTGATTCAAGGGAGTGGATTAAGCGGGCCAATTCCGTCTGGAATTTCATTTCTAGAAAACTTAACGGACTTGAGAATTAGTGATCTGAATGGATCTGAACATTCTCTTTTCCCACAACTTAATCAGATGAAGAACTTGAAATATCTGATTCTAAGGAATTGCAACATCAATGGAACACTACCTCCATATCTTGGGAATATGACAACTTTAAAAAACTTAGACCTTAGCTTTAACAAATTGACTGGACCAATTCCAAGTACCTATGATGCCCTAAGAAAAGTGGATTACATATATTTAACTGGGAATCTTCTCAATGGACAAGTACCTGCATGGACAGAGAAAAGTGACAATGTGGATATTTCATTTAACAACTTCAGCGTCACAAGCCAAGGGAGTACATGTCAAATTGGAAATGTGAACTTGTTTGCTAGCTCTATGACGCACAATGACTCAGGAACAGTTGCATGCTTAGGAAGCAGTGTCTGTCAAGAAACGTTATATTCTCTTCATATAAATTGTGGAGGAAAGATAGTAACAGACAATGGAAGCACATATGATGATGATTCAGATACTGGAGGTCCAGCAAGATTTCACCGAAGTGGAACAAAAAATTGGGCATATATCAATACTGGTAACTTTATGGATAATGACGCTGGCGCCTATTATATCGTGCAAAATAAAACTTTGCTTTCTATGGACAATGTTGACCTATACATGGATGCTCGAGTTTCTCCCATTTCTCTTACTTACTATGGATTTTGCCTGGGAAATGGAAACTACACGGTTAATCTACATTTTGCGGAAATCATGTTCATTGATGATCAAACATTTAACAGCTTAGGAAGACGAGTATTTGACATCTATATTCAGGGAGCGCTAGTGAAGAAGGACTTTGATATTGTAGAAGAAGCAGGAGGAATTGGTAAGGCAGTCATCACATCATTCACTGCTGTTGTGACTAGTAATACCTTGGAGATCCGCTTGTATTGGGCTGGAAAAGGAACAACCAGTCTTCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGAACCTGATTTTACACCTCCTTCGAAAAACAAAAGTAGCATATCTGTAGGAGTTGTGGTTGGAGTTGTGGCAGCAGGAGCAGTTGTTATCATCCTTGTACTTGGTATACTTTGGTGGAAAGGCTGCTTCGGAAAGAAAAGTTCTTTAGAGAGAGAGCTACAAGGTTTAGACCTGCGAACGGGTTTGTTTACTTTAAGACAAATCAAAGCAGCGACAAACAACTTTGATGTTGCCAATAAGATTGGAGAAGGAGGTTTTGGTCCTGTGTACAAGGGATGTTTCTCAGATGGAACACTAATAGCTGTCAAACAACTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTCTGCAGCATCCTCATCTTGTTAAACTCTATGGATGTTGTGTGGAGGGAGATCAACTATTGTTGGTATATGAATATATGGAAAACAATAGTCTTGCTCGCGCTCTATTTGGCGCCGAAGAACACCAAATAAAATTGGACTGGACAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGATTGTTCATAGGGACATTAAGGCAACTAATGTGTTGCTTGATCAAGATCTCAATCCAAAAATATCAGACTTTGGTTTGGCCAAGCTTGATGAAGAGGACAACACTCATATTAGCACCCGAATAGCTGGGACATTTGGATATATGGCTCCAGAATATGCCATGCATGGTTACTTGACTGATAAAGCAGACGTCTATAGCTTTGGAATTGTTGCTTTGGAAATCATAAACGGAAGGAGCAATACTATTCACCGACAAAAAGAAGAATCATTCTCTGTTCTTGAATGGGCACATCTGTTGAGAGAGAAAGGAGATATAATGGATCTAGTTGATAGAAGATTAGGTTTAGAGTTCAACAAAGAGGAGGCGCTAGTGATGATCAAGGTAGCTCTCTTATGCACTAATGTGACTGCAGCACTTAGGCCAACCATGTCATCGGTGGTCAGCATGCTAGAAGGAAAAATTGTTGTTGATGAAGAGTTTTCTGGAGAGACAACTGAGGTATTGGATGAGAAGAAAATGGAGAAAATGAGATTGTATTACCAAGAGCTGAGTAACTCAAAGGAAGAACCATGGACAGCTTCATCTACTTCTGTAGCAGATCTTTATCCTGTGGGCCTAGATTCTTCTTACTTGGAGAAGAGAGATTAA 3000 0.4 MRSVSSPGFFFLLFLAAFSFANFASGATLLQDEVKALEDIAKTLGKKDWDFNVDPCSGQRNWTSAVQVKGSENNVTCDCTFANGTVCHVTNILLKSQNLPGTLPRDLFRLPFLQEIDLTRNYLNGTIPKEWGSTKLAIISLLGNRLTGSIPIEIANISTLQSLVLEGNQLSGNLPPELGNLTQIQRLLLSSNNFIGELPVTLVKLTTLQDIRIGDNQFSGKIPNFIQSLTSLQKLVIQGSGLSGPIPSGISFLENLTDLRISDLNGSEHSLFPQLNQMKNLKYLILRNCNINGTLPPYLGNMTTLKNLDLSFNKLTGPIPSTYDALRKVDYIYLTGNLLNGQVPAWTEKSDNVDISFNNFSVTSQGSTCQIGNVNLFASSMTHNDSGTVACLGSSVCQETLYSLHINCGGKIVTDNGSTYDDDSDTGGPARFHRSGTKNWAYINTGNFMDNDAGAYYIVQNKTLLSMDNVDLYMDARVSPISLTYYGFCLGNGNYTVNLHFAEIMFIDDQTFNSLGRRVFDIYIQGALVKKDFDIVEEAGGIGKAVITSFTAVVTSNTLEIRLYWAGKGTTSLPFRSVYGPLISAISVEPDFTPPSKNKSSISVGVVVGVVAAGAVVIILVLGILWWKGCFGKKSSLERELQGLDLRTGLFTLRQIKAATNNFDVANKIGEGGFGPVYKGCFSDGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPHLVKLYGCCVEGDQLLLVYEYMENNSLARALFGAEEHQIKLDWTTRYKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDQDLNPKISDFGLAKLDEEDNTHISTRIAGTFGYMAPEYAMHGYLTDKADVYSFGIVALEIINGRSNTIHRQKEESFSVLEWAHLLREKGDIMDLVDRRLGLEFNKEEALVMIKVALLCTNVTAALRPTMSSVVSMLEGKIVVDEEFSGETTEVLDEKKMEKMRLYYQELSNSKEEPWTASSTSVADLYPVGLDSSYLEKRD* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2878 999 SUPERFAMILY L domain-like 67 345 - -
Gso11g2878 999 Gene3D Ribonuclease Inhibitor 266 374 IPR032675 -
Gso11g2878 999 Gene3D Ribonuclease Inhibitor 32 197 IPR032675 -
Gso11g2878 999 Pfam Protein tyrosine and serine/threonine kinase 665 934 IPR001245 GO:0004672|GO:0006468
Gso11g2878 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Gso11g2878 999 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 291 - -
Gso11g2878 999 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 292 361 - -
Gso11g2878 999 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 386 975 - -
Gso11g2878 999 Gene3D Ribonuclease Inhibitor 198 265 IPR032675 -
Gso11g2878 999 Gene3D - 399 590 - -
Gso11g2878 999 ProSiteProfiles Protein kinase domain profile. 663 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2878 999 Gene3D Transferase(Phosphotransferase) domain 1 739 949 - -
Gso11g2878 999 SUPERFAMILY Protein kinase-like (PK-like) 647 937 IPR011009 -
Gso11g2878 999 SMART serkin_6 663 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2878 999 CDD STKc_IRAK 669 936 - -
Gso11g2878 999 Gene3D Phosphorylase Kinase; domain 1 632 738 - -
Gso11g2878 999 Pfam Malectin domain 403 586 IPR021720 -
Gso11g2878 999 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 76 291 - -
Gso11g2878 999 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 386 975 - -
Gso11g2878 999 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 292 361 - -
Gso11g2878 999 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2878 Gso-Chr11 44504207 44517131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2878 21 984 Receptor kinase-like Gene Family AT1G53420 55.567 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g2878 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1760 15 33185592 33190802 Gso11g2878 11 44504207 44517131 PCT